BrainVISA

A quick look makes me believe that it is not an error in our code but in a CMake code used to assess some configuration of the system. Do you have libpthread.so installed ? On Ubuntu-16.04, it is located in /usr/lib/x86_64-linux-gnu/libpthread.so and installed by package libc6-dev.

Hi,

Yes, it is a bug. I started to look at it but failed to find time to fix it.

Yann

Hi, The processes you are talking about are part of the Nuclear Processing toolbox (that was named Nuclear Imaging years ago). According to some research in our source code management system, there is almost no activity since the beginning of 2011. No one in CATI is using nor maintaining this toolbo...

It seem that using build for Glibc 2.6 does not always solve the problem. I know one case where both package were not working. It is possible that these problems are related to missing dynamic libraries in the package. These libraries are found on the system but, even if they have the same version, ...

Hi, I also have the crash of Morphologist* on a Laptop running Ubuntu 16.04. Commenting the two plugins only partially solve the problem. Hopefully, I managed to run Morphologist with sulci recognition by using another build of BrainVISA 4.5.0. The build compiled for Glibc 2.6 under Mandriva 2008 (i...

Hi Laurie, If you only need to use the result of AimsVoiStat, you shoud use AimsRoiFeatures because it is a replacement to AimsVoiStat and you can use either an image or a Graph as ROI (i.e. you do not have to convert). But, in order to investigate the conversion bug anyway, we would need one of you...

If the problem comes from dcm2nii, it is strange that the problem only arise at the third step. Have you looked at the intermediate results of steps 1 and 2 ? Could you send us one of your image with problem ?

Denis and I have found a way to patch a BrainVISA installation in order to fix the problem with Gnome. I wrote a Python script (attached to this message) that must be run with the Python from the BrainVISA package to patch. This script simply modify a Qt dynamic library to make it unable to identify...

Hi Manik,

You can try to change the Qt style of the appliaction. See the following post:

http://brainvisa.info/forum/viewtopic.p ... 6070#p6070

Best,

Yann

I found a way to make BrainVISA work with Gnome. The problems comes from a Qt plugins that adds the GTK+ style to the application. This plugin is installed on some systems and is used for default style when a Qt application is started from a Gnome desktop. Using this plugin may crash the application...

For eddy current correction and diffusion tensor estimation I think BrainVISA still rely on methods described in the following paper. ftp://static.lnao.fr/lnao/static/papers/poupon-MIA01.pdf The brain extraction from T2 images (i.e. not the brain extraction from T1 done in Morphologist toolbox) is d...

The snow leopard (Uncia uncia or Panthera uncia) is a moderately large cat native to the mountain ranges of South Asia and Central Asia.
Sorry for the bad joke. According to Google results it is MacOS 10.6.

The tex format can be in binary or in ascii. To convert in ascii, you can use the following: You can do the same with a Gifti output:

This toolbox is not yet ready to be distributed. Authors of SACHA are working on its packaging for distribution. When its done they will choose their distribution policy. In the meantime you should contact them directly.