Search found 63 matches
- Tue Apr 10, 2018 11:08 am
- Forum: Anatomist
- Topic: linkCursorLastClickedPosition() in BrainVISA 4.6?
- Replies: 11
- Views: 21423
linkCursorLastClickedPosition() in BrainVISA 4.6?
Hello, I'm trying to understand differences of behavior of the anatomist API between BrainVISA 4.5 and 4.6. With 4.6, linkCursorLastClickedPosition() seems the return positions in the referential currently selected in the view. I have two views of the same volume, one with the referential "t1mr...
- Mon Apr 09, 2018 11:03 am
- Forum: Anatomist
- Topic: QPixmap::setMask() mask size differs from pixmap size
- Replies: 17
- Views: 31679
Re: QPixmap::setMask() mask size differs from pixmap size
And after loading all the objects we need: https://www.dropbox.com/s/un6qpq8atkt4kf5/qpixmap_after.gif?dl=0 Corresponding output in the console: pydev debugger: starting (pid: 215) Headless Anatomist running in normal (non-headless) mode LAUNCHING ELECTRODE LOCATE MAIN NO APP Loading toolbox cortica...
- Mon Apr 09, 2018 10:56 am
- Forum: Anatomist
- Topic: QPixmap::setMask() mask size differs from pixmap size
- Replies: 17
- Views: 31679
Re: QPixmap::setMask() mask size differs from pixmap size
In the attached screen capture, you can see the line responsible of 3 of these errors, the content of the variable diskitem, the IntrAnat interface and the resulting anatomist window (one volume added). (I cannot add images to this post, error message "Could not upload attachment to ./../forum_...
- Fri Apr 06, 2018 2:10 pm
- Forum: Anatomist
- Topic: QPixmap::setMask() mask size differs from pixmap size
- Replies: 17
- Views: 31679
Re: QPixmap::setMask() mask size differs from pixmap size
We get 2 or 3 messages of this kind every time we call loadObject(), both for .nii volumes and .gii meshes.
- Fri Apr 06, 2018 1:57 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Re: Error in brainvisa-4.6.0/python/brainvisa/processes.py
I'm running this from my PyDev debugger.
In the configuration of my interpreter I added brainvisa folders to my python path, $PATH and $LD_LIBRARY_PATH until it works.
Would you suggest a nicer way of proceeding?
In the configuration of my interpreter I added brainvisa folders to my python path, $PATH and $LD_LIBRARY_PATH until it works.
Would you suggest a nicer way of proceeding?
- Fri Apr 06, 2018 12:43 pm
- Forum: Anatomist
- Topic: QPixmap::setMask() mask size differs from pixmap size
- Replies: 17
- Views: 31679
QPixmap::setMask() mask size differs from pixmap size
Hello
I get hundreds of messages like this when loading objects in anatomist.
Any suggestion?
Thanks
Francois
I get hundreds of messages like this when loading objects in anatomist.
Any suggestion?
Thanks
Francois
- Fri Apr 06, 2018 12:25 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Re: Error in brainvisa-4.6.0/python/brainvisa/processes.py
I added brainvisa/bin to the PATH variable and the errors are gone. It's surprising it didn't cause any problem before... I think I started getting this issue after installing ffmpeg. We do not start the BrainVISA interface from a terminal. Various BrainVISA modules are imported in our Python code, ...
- Thu Apr 05, 2018 5:07 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Re: Error in brainvisa-4.6.0/python/brainvisa/processes.py
Maybe related also with the way I start BrainVISA... After installing/updating some Ubuntu packages, I get lost of errors when BrainVISA starts. Example: OSError processes.py (5989) in addDir: toolbox=toolbox) # two arguments : process fullpath and category (directories separated by /) processes.py ...
- Thu Mar 29, 2018 4:11 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Re: Error in brainvisa-4.6.0/python/brainvisa/processes.py
Thanks for the fix and for the info. If it's OK, I'll stick to posting public messages on this forum for now then. I got to this point by starting IntrAnat (this SEEG toolbox developed in Grenoble) from the Eclipse/PyDev debugger. So I guess this is why it doesn't initialize everything as expected. ...
- Wed Mar 28, 2018 2:58 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Re: Error in brainvisa-4.6.0/python/brainvisa/processes.py
Btw, is this forum the appropriate channel to report this kind of issues?
Or do you have a github on which I could submit issues, or some other bug tracking system?
Or do you have a github on which I could submit issues, or some other bug tracking system?
- Wed Mar 28, 2018 2:57 pm
- Forum: BrainVISA
- Topic: Error in brainvisa-4.6.0/python/brainvisa/processes.py
- Replies: 10
- Views: 21611
Error in brainvisa-4.6.0/python/brainvisa/processes.py
Hello We have code calling FreeSurfer functions with launchFreesurferCommand > context.system > _system. None of the functions called return properly, because line 3454 returns an error. On my configuration, neuroConfig.brainvisaSysEnv.getVariables() returns None, and own_env.update() is not equippe...
- Thu Mar 15, 2018 11:30 am
- Forum: BrainVISA
- Topic: Missing libapt-pkg.so.4.12
- Replies: 0
- Views: 31558
Missing libapt-pkg.so.4.12
Hello, Any error report triggers the error below on my WSL/Ubuntu 16.04. Missing library libapt-pkg.so.4.12: current version in Ubuntu is 5.0, but it is not part of the BrainVISA distribution. The error can be fixed by installing manually libapt-pkg4.12_1.0.9.8.4_amd64.deb, but there is maybe a bett...
- Wed Mar 14, 2018 2:17 pm
- Forum: Anatomist
- Topic: Anatomist on Windows WSL/Ubuntu 16.04
- Replies: 7
- Views: 21221
Re: Anatomist on Windows WSL/Ubuntu 16.04
Additional steps: 6) In bash terminal: type "sudo apt-get update && sudo apt-get dist-upgrade" to upgrade all the packages in Ubuntu 7) In bash terminal: type "export DISPLAY=:0" to send the X11 windows to the local MobaXterm X server (add this line to your .bashrc to sav...
- Fri Mar 09, 2018 3:41 pm
- Forum: BrainVISA
- Topic: Error importing .nii file?
- Replies: 2
- Views: 13861
Re: Error importing .nii file?
Ok thanks.
And it works with the WSL version too
And it works with the WSL version too
- Fri Mar 09, 2018 3:26 pm
- Forum: Anatomist
- Topic: Anatomist on Windows WSL/Ubuntu 16.04
- Replies: 7
- Views: 21221
Re: Anatomist on Windows WSL/Ubuntu 16.04
Oh... indeed... I tested so many software configurations that I got mixed up at some point. So the good news is that there is one configuration that actually works! Using WSL+Ubuntu+MobaXterm it is possible to run the linux version of BrainVISA on Windows 10. Here is a summary you could add to your ...