hi, everyone,
I wanna 3D reconstruct cortex with dicom files, but i dont know how to do it using BrainVISA. I would like someone kind to help me explain the main steps to reconstruct.I wonder someone would have a video about reconstruction.
Thank you & Best Wishes.
Nomad
reconstrucion main steps
Re: reconstrucion main steps
I have more to say.
I have done 3 steps including "import T1 MRI" "Prepare subject for anatomical pipeline" and "Ana do a lot of things from T1 MRI".However,something wrong occures during the third step as follows:
How to solve the problem and what should i do next?
I have done 3 steps including "import T1 MRI" "Prepare subject for anatomical pipeline" and "Ana do a lot of things from T1 MRI".However,something wrong occures during the third step as follows:
Code: Select all
! VIP Warning:
Impossible to distinguish gray and white matter: insufficient grey white contrast, you have to increase field regularization in VipBiasCorrection)
------------------------------
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! VIP Warning:
Something was wrong with the iterative erosion!
------------------------------
in Vip Split Brain 1 RuntimeError: System command exited with non null value : 111
neuroProcesses.py (1641) in _processExecution: result = process.execution( self )
VipSplitBrain.py (107) in execution:
apply( context.system, call_list+option_list )
neuroProcessesGUI.py (932) in system:
ret = apply( ExecutionContextGUI.system, (self,) + args, kwargs )
neuroProcesses.py (1721) in system:
raise RuntimeError( _t_( 'System command exited with non null value : %s' ) % str( ret ) )
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- Jean-Francois Mangin
- Posts: 337
- Joined: Mon Mar 01, 2004 10:24 am
- Location: Neurospin, CEA, France
- Contact:
Re: reconstrucion main steps
Check first the importation works, clisk on the eye in fron of your raw MRI to visualize it
with Anatomist.
with Anatomist.
Re: reconstrucion main steps
I think i have imported the dataJean-Francois Mangin wrote:Check first the importation works, clisk on the eye in fron of your raw MRI to visualize it
with Anatomist.
- Jean-Francois Mangin
- Posts: 337
- Joined: Mon Mar 01, 2004 10:24 am
- Location: Neurospin, CEA, France
- Contact:
Re: reconstrucion main steps
SO did you check the bias correction step (click on the eye in front of nobias).
By the way, I was a bit surprise by your snapshot, does your image name includes
a space?
If you do not understand anything, put your data somewhere on the web and send me
an e-mail, I will try to have a look when and I will be back in France.
By the way, I was a bit surprise by your snapshot, does your image name includes
a space?
If you do not understand anything, put your data somewhere on the web and send me
an e-mail, I will try to have a look when and I will be back in France.