T1 bias correction error
Posted: Wed Sep 05, 2012 11:31 am
Hello,
The Morphologist pipeline stops with the following error:
The image looks fine and has a very good resolution, any hint?
I can eventually send you the image if you like..
Thanks
Tiziano
The Morphologist pipeline stops with the following error:
Code: Select all
Process Morphologist 2012 started on 2012/09/05 12:29
Skip unselected node: Check SPAM models installation
OK, the image seems to be in the correct orientation.
------------------------------ ! VIP Warning: empty volume in VipComputeRobustStatInMaskVolume ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex ------------------------------ ------------------------------ ! VIP Warning: Empty bucket list in VipGetNthBiggest3DBucket_S16BIT ------------------------------ ------------------------------ ! VIP Warning: Nothing is left in VipConnexVolumeFilter ------------------------------
------------------------------ ! VIP Warning: empty volume in VipComputeRobustStatInMaskVolume ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex ------------------------------ ------------------------------ ! VIP Warning: Empty bucket list in VipGetNthBiggest3DBucket_S16BIT ------------------------------ ------------------------------ ! VIP Warning: Nothing is left in VipConnexVolumeFilter ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex ------------------------------ ------------------------------ ! VIP Warning: Empty bucket list in VipGetNthBiggest3DBucket_S16BIT ------------------------------ ------------------------------ ! VIP Warning: Nothing is left in VipConnexVolumeFilter ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex ------------------------------ ------------------------------ ! VIP Warning: Empty bucket list in VipGetNthBiggest3DBucket_S16BIT ------------------------------
------------------------------ ! VIP Warning: Empty histogram! ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function 'VipGetHistoEntropy'. ------------------------------
------------------------------ !! VIP Error: Empty image ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function 'VipComputeBiasFieldMultiGrid'. ------------------------------

in 1 - T1 Bias Correction 3 System command exited with non null value : 111
RuntimeError
neuroProcesses.py (2400) in _processExecution:
result = process.execution( self )
T1BiasCorrection.py (127) in execution:
?
neuroProcessesGUI.py (2380) in system:
?
neuroProcesses.py (2522) in system:
raise RuntimeError( _t_( 'System command exited with non null value : %s' ) % str( ret ) )

in Morphologist 2012 3 System command exited with non null value : 111
RuntimeError
neuroProcesses.py (2400) in _processExecution:
result = process.execution( self )
neuroProcesses.py (1064) in execution:
return self._executionNode.run( context )
neuroProcesses.py (1723) in run:
return self._run( context )
neuroProcesses.py (1952) in _run:
result.append( node.run( context ) )
neuroProcesses.py (1723) in run:
return self._run( context )
neuroProcesses.py (1868) in _run:
return context.runProcess( self._process )
neuroProcesses.py (2173) in runProcess:
result = self._processExecution( _process, None )
neuroProcesses.py (2400) in _processExecution:
result = process.execution( self )
T1BiasCorrection.py (127) in execution:
?
neuroProcessesGUI.py (2380) in system:
?
neuroProcesses.py (2522) in system:
raise RuntimeError( _t_( 'System command exited with non null value : %s' ) % str( ret ) )
I can eventually send you the image if you like..
Thanks
Tiziano