missing anatomist module after source build
Posted: Thu Aug 22, 2013 12:45 am
Hi,
I built the latest release of BrainVISA (4.3) from source using bv_maker. Next, I go to my build dir and run bv_env to generate environment variables that I source into my bash shell, and then I run brainvisa. The program seems to work, except certain tools are greyed out. Specifically, in Morphologist > Segmentation Pipeline > components, I want to run Prepare Subject for Anatomical Pipeline, but it is greyed out and double-clicking it gives an error:
The process morphologist/processes/segmentationpipeline/components/preparesubject.py is not available: Cannot find anatomist module
There are other tools depending on anatomist module that are similarly disabled. I think anatomist is a core module of BrainVISA, so I wonder what I did wrong in the build? I didn't see any obvious error messages in the configure and build steps.
I could use some advice on how to debug this. I'm working on Ubuntu 13.04, and I've attached my brainvisa.log file for what it's worth. I can provide any other information if needed as well.
Thanks,
--Alex
I built the latest release of BrainVISA (4.3) from source using bv_maker. Next, I go to my build dir and run bv_env to generate environment variables that I source into my bash shell, and then I run brainvisa. The program seems to work, except certain tools are greyed out. Specifically, in Morphologist > Segmentation Pipeline > components, I want to run Prepare Subject for Anatomical Pipeline, but it is greyed out and double-clicking it gives an error:
The process morphologist/processes/segmentationpipeline/components/preparesubject.py is not available: Cannot find anatomist module
There are other tools depending on anatomist module that are similarly disabled. I think anatomist is a core module of BrainVISA, so I wonder what I did wrong in the build? I didn't see any obvious error messages in the configure and build steps.
I could use some advice on how to debug this. I'm working on Ubuntu 13.04, and I've attached my brainvisa.log file for what it's worth. I can provide any other information if needed as well.
Thanks,
--Alex