libraries not loading - ubuntu 16.04
Posted: Thu Jan 11, 2018 12:22 am
Hi,
I am trying to run the morphologist pipeline but it crashes on several steps.
I successfully imported the T1 image from a .nii file and did AC/PC alignment.
After that, both FSL normalization and Bias correction failed to run and display a Signal Exception error.
I tried running the specific commands in the command line and in both cases it seems to fail to load specific libraries:
./VipT1BiasCorrection: error while loading shared libraries: libvip.so.4.5.0: cannot open shared object file: No such file or directory
./AimsFileConvert: error while loading shared libraries: libaimsdata.so.4.5.0: cannot open shared object file: No such file or directory
However, both files actually exist in the lib folder. And all users have read access to the library files.
I also ran python bv_env.py in the command line and LD_LIBRARY_PATH seems to be set correctly.
Should I set the paths in any other file?
Some more info: I am running brainvisa 4.5.0 for Linux 64 bits (glibc 2.15) (built on Ubuntu 12.04) on a Ubuntu 16.04 machine.
Help would be greatly appreciated.
Thanks,
Catarina
--
Catarina Saiote, PhD
Postdoctoral Associate
Department of Neurosurgery
University of Minnesota
I am trying to run the morphologist pipeline but it crashes on several steps.
I successfully imported the T1 image from a .nii file and did AC/PC alignment.
After that, both FSL normalization and Bias correction failed to run and display a Signal Exception error.
I tried running the specific commands in the command line and in both cases it seems to fail to load specific libraries:
./VipT1BiasCorrection: error while loading shared libraries: libvip.so.4.5.0: cannot open shared object file: No such file or directory
./AimsFileConvert: error while loading shared libraries: libaimsdata.so.4.5.0: cannot open shared object file: No such file or directory
However, both files actually exist in the lib folder. And all users have read access to the library files.
I also ran python bv_env.py in the command line and LD_LIBRARY_PATH seems to be set correctly.
Should I set the paths in any other file?
Some more info: I am running brainvisa 4.5.0 for Linux 64 bits (glibc 2.15) (built on Ubuntu 12.04) on a Ubuntu 16.04 machine.
Help would be greatly appreciated.
Thanks,
Catarina
--
Catarina Saiote, PhD
Postdoctoral Associate
Department of Neurosurgery
University of Minnesota