MRI segmentation using morphologist 2015 error
Posted: Fri Jun 15, 2018 7:41 pm
Good afternoon,
I have been trying to segment an MRI using Morphologist 2015 in brainVISA. However, I keep on getting the following error. I tried different brainVISA version on different two different computer, as well as choosing different MRI, same error.
Here is what I am doing.
First I am converting my MRI (dicom) into nifti format using MRIConvert.
Using Morphologist 2015, I import the MRI (nifty format) into t1mri.
Using the Anatomist option of t1mri, I identify the AC, PC, IH and LH.
In t1mri_nobia, I chose gz compressed NIFTI-1 image (for file format) and I put a subject name (e.g. aa01), all the other options I keep them to “any”
In image orientation handling, I chose the commissure coordinated from the database.
When I hit “run”, Image orientation handling goes fine, but I get an error at the second step (T1 Bias Correction).
-----------------------------------------------------------------------
Here is the following error I get :
-------------------------------------------------------------------------- !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !!
in T1 Bias Correction 1 System command exited with non null value : 111
________________________________________RuntimeError
in Morphologist 2015 1 System command exited with non null value : 111
________________________________________RuntimeError
--------------------------------------------------------------------------
If someone has an idea where is the problem or any help would be greatly appreciated.
Thank you
Alexjandro
I have been trying to segment an MRI using Morphologist 2015 in brainVISA. However, I keep on getting the following error. I tried different brainVISA version on different two different computer, as well as choosing different MRI, same error.
Here is what I am doing.
First I am converting my MRI (dicom) into nifti format using MRIConvert.
Using Morphologist 2015, I import the MRI (nifty format) into t1mri.
Using the Anatomist option of t1mri, I identify the AC, PC, IH and LH.
In t1mri_nobia, I chose gz compressed NIFTI-1 image (for file format) and I put a subject name (e.g. aa01), all the other options I keep them to “any”
In image orientation handling, I chose the commissure coordinated from the database.
When I hit “run”, Image orientation handling goes fine, but I get an error at the second step (T1 Bias Correction).
-----------------------------------------------------------------------
Here is the following error I get :
-------------------------------------------------------------------------- !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !! VIP Error: Execution aborted in function '(brain)VipPutOneSliceTwoZero'. ------------------------------ ------------------------------ !! VIP Error: S16BIT type ------------------------------ ------------------------------ !!
in T1 Bias Correction 1 System command exited with non null value : 111
________________________________________RuntimeError
in Morphologist 2015 1 System command exited with non null value : 111
________________________________________RuntimeError
--------------------------------------------------------------------------
If someone has an idea where is the problem or any help would be greatly appreciated.
Thank you
Alexjandro