Here is the complete sequence of error messages I get with the first execution of the FreeSurfer=>Morphologist process.
It starts with a warning saying that the UUID of the nobias volume had to be changed (while this file didn't exist previously in the DB):
Code: Select all
Launch T1BiasCorrection
Warning: changed uuid of "u'/home/ftadel/IntrAnat/brainvisa_db/Epilepsy/0001BAR_FreeSurfer/t1mri/FreesurferAtlaspre_2016-11-27/default_analysis/nobias_0001BAR_FreeSurfer.nii'" because another file has the same uuid: ce5f96fe-c8c7-9f51-d529-3bd55aedc301
Launch VipGreyStatFromClassif to generate a histo analysis file
Now run the last part of the regular Morphologist pipeline.
models: 6
SPAM models are present.
Skip unselected node: Image orientation handlingSkip
unselected node: Image orientation handlingprogress: 0.0 / 100
progress: ...
Skip unselected0.0 / 100 node: ...
SkipT1 unselected node: T1 Bias Correction
Bias Correctionprogress:
10.0 / 100 ...
Skipprogress: 10.0 / 100 ...
unselectedSkip node: Histogram analysis
unselected node: HistogramSkip analysisunselected node: Compute Brain Mask
>progress:> 20.0 / 100 ... Skip unselected progress:node: Skull-stripped
brain normalization 40.0 / 100 ...
Skip unselected
Skipnode: unselected Splitnode: Brain Mask
Split Brain MaskSkip 50.0 / 100 ... unselected node: Talairach transformation from manual
progress: 60.0 AC/PC / 100
Skip... Traceback (most recent call last):
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/qt_gui/qtThread.py", line 124, in event
unselected self.doAction()
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/qt_gui/qtThread.py", line 240, in doAction
function(*args)
node: File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processing/qt4gui/neuroProcessesGUI.py", line 1332, in setProgress
self, value, maxval)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 4039, in showProgress
self.write('progress:', value, '/', count, '...')
Head File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3648, in write
self._write(msg)
Mesh File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3674, in _write
self._writeHTMLParser.feed(html + '<br>\n')
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/lib/python2.7/sgmllib.py", line 104, in feed
self.goahead(0)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/lib/python2.7/sgmllib.py", line 138, in goahead
k = self.parse_starttag(i)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/lib/python2.7/sgmllib.py", line 274, in parse_starttag
self.error('unexpected call to parse_starttag')
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/lib/python2.7/htmllib.py", line 45, in error
raise HTMLParseError(message)
htmllib.HTMLParseError: unexpected call to parse_starttag
Skip unselected Skipnode: Grey unselected node: Grey White Classification White Classification
progress: 70.0 / 100 ...
progress: 80.0 / 100 ...
progress: 80.0 / 100 ...
progress: 80.0 / 100 ...
progress: 80.7142857143 / 100 ...
Detecting left hemisphere spherical inner cortical interface...
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex
------------------------------ ------------------------------ ! VIP Warning:
Empty bucket list in VipGetNthBiggest3DBucket_S16BIT
------------------------------ ------------------------------ ! VIP Warning:
Nothing is left in VipConnexVolumeFilter ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex
------------------------------ ------------------------------ ! VIP Warning:
Empty bucket list in VipGetNthBiggest3DBucket_S16BIT
------------------------------ ------------------------------ ! VIP Warning:
Nothing is left in VipConnexVolumeFilter ------------------------------
progress: 81.4285714286 / 100 ...
Reconstructing left hemisphere white mesh...
progress: 82.1428571429 / 100 ...
Computing left sulci skeleton and buried gyrus watershed...
progress: 82.8571428571 / 100 ...
Detecting left hemisphere spherical outer cortical surface...
Reconstructing left hemisphere pial mesh...
progress: 83.5714285714 / 100 ...
Building left hemisphere attributed relational sulci graph...
Traceback (most recent call last): File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/bin/real-bin/AimsFoldsGraphThickness.py",
line 84, in <module>
graph_out = fd.process() File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/wip/aimsalgo/foldsgraphthickness.py",
line 173, in process self.preProcess() File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/wip/aimsalgo/foldsgraphthickness.py",
line 117, in preProcess self.mid_interface_bck = f1.midInterface(self.WM_label,
self.LCR_label) Exception: unknown
ERROR in Hemisphere Sulci Thickness and Volumes 1 System command exited with non
null value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Hemisphere Cortical Folds Graph 1 System command exited with non null
value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Morphologist 2015 1 System command exited with non null value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Import FreeSurfer grey/white segmentation to Morphologist 1 System
command exited with non null value : 1
--------------------------------------------------------------------------------
RuntimeError
Process Import FreeSurfer grey/white segmentation to Morphologist finished on
2018/11/01 11:42 (29 minutes 53 seconds)
Traceback (most recent call last):
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/progressbar.py", line 119, in run
self.out = self.func(self)
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2478, in <lambda>
ProgressDialog.call(lambda thr:self.runPipelineFSWorker(diOrig, diOut, thr), True, self, "Running Morphologist on FreeSurfer output...", "FreeSufer")
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2493, in runPipelineFSWorker
self.brainvisaContext.runProcess(proc)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2985, in runProcess
six.reraise(type(e[0]), e[0], e[1])
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/freesurfer/processes/Import/Import_FROM_FreeSurfer_TO_Morpho.py", line 360, in execution
context.runProcess( morphologist )
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 1653, in execution
return self._executionNode.run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2705, in _run
return super(ParallelExecutionNode, self)._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2513, in _run
return context.runProcess(self._process)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/corticalfoldsgraph.py", line 229, in execution
sulci_voronoi=self.sulci_voronoi)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/CorticalFoldsGraphThickness.py", line 79, in execution
context.pythonSystem(*cmd)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3465, in pythonSystem
return self.system(sys.executable, exe, *args[1:], **kwargs)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3441, in system
_t_('System command exited with non null value : %s') % str(ret))
RuntimeError: System command exited with non null value : 1
I start the same process again, I get this:
Code: Select all
Process Import FreeSurfer grey/white segmentation to Morphologist started on
2018/11/01 12:14
ERROR in Import FreeSurfer grey/white segmentation to Morphologist 2 The file:
/home/ftadel/IntrAnat/brainvisa_db/Epilepsy/0001BAR_FreeSurfer/t1mri/FreesurferAtlaspre_2016-11-27/0001BAR_FreeSurfer.nii
is locked. It cannot be opened for writing. You can unlock it if necessary using
the contextual menu of the parameter T1_output
--------------------------------------------------------------------------------
IOError
Process Import FreeSurfer grey/white segmentation to Morphologist finished on
2018/11/01 12:14 (0 seconds)
Traceback (most recent call last):
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/progressbar.py", line 119, in run
self.out = self.func(self)
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2478, in <lambda>
ProgressDialog.call(lambda thr:self.runPipelineFSWorker(diOrig, diOut, thr), True, self, "Running Morphologist on FreeSurfer output...", "FreeSufer")
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2493, in runPipelineFSWorker
self.brainvisaContext.runProcess(proc)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2985, in runProcess
six.reraise(type(e[0]), e[0], e[1])
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3205, in _processExecution
HTMLMessage(_t_('<b>The file: <em>%s</em> is locked</b>. It cannot be opened for writing. You can unlock it if necessary using the contextual menu of the parameter %s') % (str(v), n)))
IOError: <b>The file: <em>/home/ftadel/IntrAnat/brainvisa_db/Epilepsy/0001BAR_FreeSurfer/t1mri/FreesurferAtlaspre_2016-11-27/0001BAR_FreeSurfer.nii</em> is locked</b>. It cannot be opened for writing. You can unlock it if necessary using the contextual menu of the parameter T1_output
I delete all the .lock files, start again, and then I get the error I first mentioned:
Code: Select all
Launch T1BiasCorrection
UUID conflict in database, uuid: 6f90f9d9-e5dc-2d69-6288-9be5f847a9e9
while inserting: Epilepsy/0001BAR_FreeSurfer/t1mri/FreesurferAtlaspre_2016-11-27/default_analysis/nobias_0001BAR_FreeSurfer.nii
file(s) with the same UUID:
UUID conflict in database, uuid: 6f90f9d9-e5dc-2d69-6288-9be5f847a9e9
while inserting: Epilepsy/0001BAR_FreeSurfer/t1mri/FreesurferAtlaspre_2016-11-27/default_analysis/nobias_0001BAR_FreeSurfer.nii
file(s) with the same UUID:
ERROR Error binding parameter 0 - probably unsupported type.
--------------------------------------------------------------------------------
InterfaceError
processes.py (3303) in _processExecution:
item, update=True)
sqlFSODatabase.py (296) in insertDiskItem:
self.insertDiskItems((item, ), **kwargs)
sqlFSODatabase.py (2288) in insertDiskItems:
insertParentDirs=insertParentDirs)
sqlFSODatabase.py (1335) in insertDiskItems:
'WHERE _uuid=?', (diskItem._uuid, ))
Launch VipGreyStatFromClassif to generate a histo analysis file
Now run the last part of the regular Morphologist pipeline.
progress:progress: 0.0 0.0 / 100 ...
/Skip 100 ...
unselected node: Image orientation handlingprogress:
progress: 10.0 10.0/ 100 ...
/ 100 ...Skip
unselected node: T1 Bias Correctionprogress: 20.0 /
progress: 100 20.0 / 100 ...
Skip...
unselected node: Histogram analysisprogress: 30.0
progress:/ 30.0 / 100 ...100
Skip unselected...
node: Compute Brain Maskprogress:
progress: 40.040.0 / 100 ... /
Skip unselected node: Skull-stripped brain normalization100
...progress:
progress:50.0 50.0 / 100 ...
Skip unselected/
100 ...
node: Split Brain Maskprogress: progress: 60.0 / 100 ... 60.0 / 100 ...
Skip Skip unselected node: Talairachunselected transformation from node: manual AC/PC
Skip unselected node: Talairach transformation from manualHead AC/PCMesh
Skip unselected progress:node: 70.0 / 100 Head Mesh
...progress: 80.0 / 100 ...
Skip unselected node: GreySkip White Classification
unselected node: Grey White Classificationprogress: 80.0 / 100 ...
progress: 80.0 / 100 ...
progress: 80.7142857143 / 100 ...
Detecting left hemisphere spherical inner cortical interface...
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex
------------------------------ ------------------------------ ! VIP Warning:
Empty bucket list in VipGetNthBiggest3DBucket_S16BIT
------------------------------ ------------------------------ ! VIP Warning:
Nothing is left in VipConnexVolumeFilter ------------------------------
------------------------------ ! VIP Warning: Empty volume in VipGet3DConnex
------------------------------ ------------------------------ ! VIP Warning:
Empty bucket list in VipGetNthBiggest3DBucket_S16BIT
------------------------------ ------------------------------ ! VIP Warning:
Nothing is left in VipConnexVolumeFilter ------------------------------
progress: 81.4285714286 / 100 ...
Reconstructing left hemisphere white mesh...
progress: 82.1428571429 / 100 ...
Computing left sulci skeleton and buried gyrus watershed...
progress: 82.8571428571 / 100 ...
Detecting left hemisphere spherical outer cortical surface...
Reconstructing left hemisphere pial mesh...
progress: 83.5714285714 / 100 ...
Building left hemisphere attributed relational sulci graph...
Traceback (most recent call last): File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/bin/real-bin/AimsFoldsGraphThickness.py",
line 84, in <module>
graph_out = fd.process() File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/wip/aimsalgo/foldsgraphthickness.py",
line 173, in process self.preProcess() File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/soma/wip/aimsalgo/foldsgraphthickness.py",
line 117, in preProcess self.mid_interface_bck = f1.midInterface(self.WM_label,
self.LCR_label) Exception: unknown
ERROR in Hemisphere Sulci Thickness and Volumes 2 System command exited with non
null value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Hemisphere Cortical Folds Graph 3 System command exited with non null
value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Morphologist 2015 2 System command exited with non null value : 1
--------------------------------------------------------------------------------
RuntimeError
ERROR in Import FreeSurfer grey/white segmentation to Morphologist 3 System
command exited with non null value : 1
--------------------------------------------------------------------------------
RuntimeError
Process Import FreeSurfer grey/white segmentation to Morphologist finished on
2018/11/01 12:46 (29 minutes 16 seconds)
Traceback (most recent call last):
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/progressbar.py", line 119, in run
self.out = self.func(self)
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2478, in <lambda>
ProgressDialog.call(lambda thr:self.runPipelineFSWorker(diOrig, diOut, thr), True, self, "Running Morphologist on FreeSurfer output...", "FreeSufer")
File "/home/ftadel/IntrAnat/IntrAnat_ftadel/ImageImport.py", line 2493, in runPipelineFSWorker
self.brainvisaContext.runProcess(proc)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2985, in runProcess
six.reraise(type(e[0]), e[0], e[1])
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/freesurfer/processes/Import/Import_FROM_FreeSurfer_TO_Morpho.py", line 360, in execution
context.runProcess( morphologist )
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 1653, in execution
return self._executionNode.run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2705, in _run
return super(ParallelExecutionNode, self)._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2632, in _run
result.append(node.run(context))
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2276, in run
return self._run(context)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2513, in _run
return context.runProcess(self._process)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/corticalfoldsgraph.py", line 229, in execution
sulci_voronoi=self.sulci_voronoi)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 2978, in runProcess
result = self._processExecution(_process, None)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3261, in _processExecution
result = process.execution(self)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/CorticalFoldsGraphThickness.py", line 79, in execution
context.pythonSystem(*cmd)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3465, in pythonSystem
return self.system(sys.executable, exe, *args[1:], **kwargs)
File "/home/ftadel/IntrAnat/brainvisa-4.6.1-beta-Ubuntu-16.04_x86_64/python/brainvisa/processes.py", line 3441, in system
_t_('System command exited with non null value : %s') % str(ret))
RuntimeError: System command exited with non null value : 1
I posted the other messages as separate topics:
http://brainvisa.info/forum/viewtopic.php?f=2&t=1868
http://brainvisa.info/forum/viewtopic.php?f=2&t=1869