Hi,
I have some new problem with aims.
I have installed the brainvisa (ubuntu version) on a ubuntu16.04.
it worked for a long time, and now I have this problem:
/home/epinavubuntu/Desktop/brainvisa_4.5/bin/AimsFileConvert -i /media/epinavubuntu/backup_pierre2/brainvisa_4.5/Epilepsy/Gre_2016_coucou/t1mri/T1pre_2015-1-1/Gre_2016_RICl.nii -o /tmp/test.nii
Segmentation fault (core dumped)
the .nii that I am trying to convert is a nii that I already tried before and it worked.
all aims stuff seems to do a segmentation fault now, but I don't remember having change anything on my computers ....
I tried reinstalling brainvisa, it's still the same problem...
Any idea how I could solve this ?
Cheers,
Pierre
aims segmentation fault (core dumped)
Re: aims segmentation fault (core dumped)
if I do
ldd ./AimsFileConvert I have this
linux-vdso.so.1 => (0x00007ffeea7e6000)
libaimsdata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libaimsdata.so.4.5.0 (0x00007fee316b4000)
libcartodata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartodata.so.4.5.0 (0x00007fee30cbe000)
libsoma-io.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libsoma-io.so.4.5.0 (0x00007fee308e7000)
libcartobase_1.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase_1.so.4.5.0 (0x00007fee2fbb9000)
libcartobase_0.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase_0.so.4.5.0 (0x00007fee2f598000)
libsigc-2.0.so.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libsigc-2.0.so.0 (0x00007fee2f392000)
libstdc++.so.6 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libstdc++.so.6 (0x00007fee2f092000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fee2ed6e000)
libgcc_s.so.1 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libgcc_s.so.1 (0x00007fee2eb57000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fee2e78e000)
libgraph.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libgraph.so.4.5.0 (0x00007fee2e476000)
libcartobase.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase.so.4.5.0 (0x00007fee2d862000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fee2d645000)
libxml2.so.2 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libxml2.so.2 (0x00007fee2d2e8000)
/lib64/ld-linux-x86-64.so.2 (0x0000560f7cfdf000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fee2d0e4000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fee2cec9000)
ldd ./AimsFileConvert I have this
linux-vdso.so.1 => (0x00007ffeea7e6000)
libaimsdata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libaimsdata.so.4.5.0 (0x00007fee316b4000)
libcartodata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartodata.so.4.5.0 (0x00007fee30cbe000)
libsoma-io.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libsoma-io.so.4.5.0 (0x00007fee308e7000)
libcartobase_1.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase_1.so.4.5.0 (0x00007fee2fbb9000)
libcartobase_0.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase_0.so.4.5.0 (0x00007fee2f598000)
libsigc-2.0.so.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libsigc-2.0.so.0 (0x00007fee2f392000)
libstdc++.so.6 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libstdc++.so.6 (0x00007fee2f092000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fee2ed6e000)
libgcc_s.so.1 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libgcc_s.so.1 (0x00007fee2eb57000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fee2e78e000)
libgraph.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libgraph.so.4.5.0 (0x00007fee2e476000)
libcartobase.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartobase.so.4.5.0 (0x00007fee2d862000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fee2d645000)
libxml2.so.2 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libxml2.so.2 (0x00007fee2d2e8000)
/lib64/ld-linux-x86-64.so.2 (0x0000560f7cfdf000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fee2d0e4000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fee2cec9000)
- riviere
- Site Admin
- Posts: 1361
- Joined: Tue Jan 06, 2004 12:21 pm
- Location: CEA NeuroSpin, Saint Aubin, France
- Contact:
Re: aims segmentation fault (core dumped)
Hi,
We have found that the Ubuntu version has more dependencies that we expected, and some of them are not packaged within the brainvisa distribution yet, so it's safer to use the Mandriva variant for now. We'll fix this for the next release.
Denis
We have found that the Ubuntu version has more dependencies that we expected, and some of them are not packaged within the brainvisa distribution yet, so it's safer to use the Mandriva variant for now. We'll fix this for the next release.
Denis