Automatic segmentation into Brodmann Areas
Automatic segmentation into Brodmann Areas
Hello,
Is there a way to get an automatic segmentation of a T1-image with Anatomist ? I mean, a segmentatin of the brain into Brodmann Areas which would define different Brodmann areas as differents ROI ?
Thanks
Josselin HOUENOU
Is there a way to get an automatic segmentation of a T1-image with Anatomist ? I mean, a segmentatin of the brain into Brodmann Areas which would define different Brodmann areas as differents ROI ?
Thanks
Josselin HOUENOU
- Jean-Francois Mangin
- Posts: 337
- Joined: Mon Mar 01, 2004 10:24 am
- Location: Neurospin, CEA, France
- Contact:
- Jean-Francois Mangin
- Posts: 337
- Joined: Mon Mar 01, 2004 10:24 am
- Location: Neurospin, CEA, France
- Contact:
There is also a Brainvisa version of Marie Chupin's work (I did it with her), but I am not sure about the distribution of this package. You can ask her directly by using the private messaging function on this forum, for the user marie chupin. Just click on "pm" on this page :
http://brainvisa.info/forum/profile.php ... file&u=139
http://brainvisa.info/forum/profile.php ... file&u=139
Manik Bhattacharjee
INSERM U836
INSERM U836
Re: Automatic segmentation into Brodmann Areas
Does anyone have updated info on Marie Chupin's plugin or know of a protocol for automated hippocampus segmentation/measurement? I have been unable to track this down or find any information on how to conduct such an analysis. Thanks for your help.
Re: Automatic segmentation into Brodmann Areas
Hi,
if you´re looking for hippocampus segmentation software outside BrainVisa i suggest you have a look at FSL-FIRST.
best,
-joost
if you´re looking for hippocampus segmentation software outside BrainVisa i suggest you have a look at FSL-FIRST.
best,
-joost
Re: Automatic segmentation into Brodmann Areas
Hi,
you can ask Marie directly about her software, I know she is still improving her program and the brainvisa processes.
I will send you her address through a private message,
you can ask Marie directly about her software, I know she is still improving her program and the brainvisa processes.
I will send you her address through a private message,
Manik Bhattacharjee
INSERM U836
INSERM U836
-
- Posts: 4
- Joined: Sat Jul 21, 2007 12:22 am
- Location: columbia university, new york
- Contact:
Re: Automatic segmentation into Brodmann Areas
I enjoyed reading Marie Chupin's ISBI 2008 paper: "Fully automatic hippocampus segmentation discriminates between early Alzheimer's disease and normal aging" -- very nice work. The results seem to be competitive with the following published fully automated hippocampus segmentation software packages:
1. S. Powell et al. / NeuroImage 39 (2008) 238–247
2. Morra, et. al. NeuroImage Volume 43, Issue 1, 15 October 2008, Pages 59-68
3. Vanderlijn et al. Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts. Neuroimage (2008) vol. 43 (4) pp. 708-720
I would be very interested to evaluate Marie Chupin's approach as well for use in our research here at Columbia University. Could you please put me in touch with Ms. Chupin? (my email address is arno[at]binarybottle.com)
Cheers,
@rno
arno klein
asst. professor of clinical neurobiology
columbia university
1. S. Powell et al. / NeuroImage 39 (2008) 238–247
2. Morra, et. al. NeuroImage Volume 43, Issue 1, 15 October 2008, Pages 59-68
3. Vanderlijn et al. Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts. Neuroimage (2008) vol. 43 (4) pp. 708-720
I would be very interested to evaluate Marie Chupin's approach as well for use in our research here at Columbia University. Could you please put me in touch with Ms. Chupin? (my email address is arno[at]binarybottle.com)
Cheers,
@rno
arno klein
asst. professor of clinical neurobiology
columbia university
- Yann Cointepas
- Posts: 316
- Joined: Tue Jan 20, 2004 2:56 pm
- Location: Neurospin, Saint Aubin, France
- Contact:
Re: Automatic segmentation into Brodmann Areas
Hi Arno,
I sent an email to Marie with a link to your message.
Best regards,
Yann Cointepas
I sent an email to Marie with a link to your message.
Best regards,
Yann Cointepas
-
- Posts: 4
- Joined: Sat Jul 21, 2007 12:22 am
- Location: columbia university, new york
- Contact:
Re: Automatic segmentation into Brodmann Areas
Thank you, but I still haven't heard back from Marie Chupin. Is there someone with whom I can discuss this application of BrainVISA? Again, I would be interested in evaluating the software for possible use by our imaging laboratories.
cheers,
@rno
cheers,
@rno