When processing the anatomical pipeline, we have the following problem with the Split Brain step:
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in Vip Split Brain 1 RuntimeError: System command exited with non null value : 111
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erosion of size 4.000000 mm
dist: 4.0
cc(16928) highest point: x:83, y:170, z:67
cc(13819) highest point: x:72, y:172, z:68
cc(576) highest point: x:104, y:199, z:115
cc: 16928 points, back: 0%, right: 100%, left: 0%, cereb: 0%
cc: 13819 points, back: 35%, right: 20%, left: 0%, cereb: 44%
cc: 576 points, back: 0%, right: 99%, left: 0%, cereb: 0%
color choice (R=1,L=2,C=3) : 1 0 1
--------------------Bad split-------------------
Perhaps CA, CP and InterHemispheric point are bad?
(if you have not set it)
As an alternative, you can disable
the use of the voronoi template (-T n)
-----Perhaps you can wait for the next one------
Can not find hemisphere seeds
We have the same problem with either versions 3.0.1, 3.0.2 or 3.1
Also, the same problem occurs with about 75% of our database.
I could not find anything in our data that could explain this problem. The MRIs are acquired in sagittal. The GM/WM constrast is not great but should be sufficient.
Does anybody have an idea?
Thanks a lot
Olivier