morphologist.capsul.axon.normalization.Normalization¶
Normalization¶
Note
- Type ‘Normalization.help()’ for a full description of this process parameters.
- Type ‘<Normalization>.get_input_spec()’ for a full description of this process input trait types.
- Type ‘<Normalization>.get_output_spec()’ for a full description of this process output trait types.
Inputs¶
[Mandatory]
- nodes_activation: a legal value ([‘ControllerTrait’] - mandatory)
- No description.
- select_Normalization_pipeline: a legal value ([‘Enum’] - mandatory)
- No description.
- t1mri: a file name ([‘File’] - mandatory)
- No description.
- allow_flip_initial_MRI: a boolean ([‘Bool’] - mandatory)
- No description.
[Optional]
- commissures_coordinates: a file name ([‘File’] - optional)
- No description.
- init_translation_origin: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeFSL_template: a file name ([‘File’] - optional)
- No description.
- NormalizeFSL_alignment: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeFSL_set_transformation_in_source_volume: a boolean ([‘Bool’] - optional)
- No description.
- NormalizeFSL_allow_retry_initialization: a boolean ([‘Bool’] - optional)
- No description.
- NormalizeFSL_NormalizeFSL_cost_function: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeFSL_NormalizeFSL_search_cost_function: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeFSL_ConvertFSLnormalizationToAIMS_standard_template: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeSPM_NormalizeSPM: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeSPM_template: a file name ([‘File’] - optional)
- No description.
- NormalizeSPM_allow_retry_initialization: a boolean ([‘Bool’] - optional)
- No description.
- NormalizeSPM_voxel_size: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeSPM_cutoff_option: an integer (int or long) ([‘Int’] - optional)
- No description.
- NormalizeSPM_nbiteration: an integer (int or long) ([‘Int’] - optional)
- No description.
- NormalizeSPM_ConvertSPMnormalizationToAIMS_target: a legal value ([‘Enum’] - optional)
- No description.
- NormalizeSPM_ConvertSPMnormalizationToAIMS_normalized_volume: a file name ([‘File’] - optional)
- No description.
- NormalizeSPM_ConvertSPMnormalizationToAIMS_removeSource: a boolean ([‘Bool’] - optional)
- No description.
- NormalizeBaladin_template: a file name ([‘File’] - optional)
- No description.
- NormalizeBaladin_set_transformation_in_source_volume: a boolean ([‘Bool’] - optional)
- No description.
- Normalization_AimsMIRegister_anatomical_template: a file name ([‘File’] - optional)
- No description.
- Normalization_AimsMIRegister_mni_to_acpc: a file name ([‘File’] - optional)
- No description.
- Normalization_AimsMIRegister_smoothing: a float ([‘Float’] - optional)
- No description.
Outputs¶
- transformation: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- reoriented_t1mri: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- output_commissures_coordinates: a file name ([‘File (filename: input)’] - optional)
- No description.
- normalized: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- NormalizeFSL_NormalizeFSL_transformation_matrix: a file name ([‘File (filename: input)’] - optional)
- No description.
- NormalizeSPM_spm_transformation: a file name ([‘File (filename: input)’] - optional)
- No description.
- NormalizeBaladin_NormalizeBaladin_transformation_matrix: a file name ([‘File (filename: input)’] - optional)
- No description.
- Normalization_AimsMIRegister_transformation_to_template: a file name ([‘File (filename: input)’] - optional)
- No description.
- Normalization_AimsMIRegister_transformation_to_ACPC: a file name ([‘File (filename: input)’] - optional)
- No description.
Pipeline schema¶
