morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline

SPMnormalizationPipeline

Note

  • Type ‘SPMnormalizationPipeline.help()’ for a full description of this process parameters.
  • Type ‘<SPMnormalizationPipeline>.get_input_spec()’ for a full description of this process input trait types.
  • Type ‘<SPMnormalizationPipeline>.get_output_spec()’ for a full description of this process output trait types.

Inputs

[Mandatory]

nodes_activation: a legal value ([‘ControllerTrait’] - mandatory)
No description.
NormalizeSPM: a legal value ([‘Enum’] - mandatory)
No description.
t1mri: a file name ([‘File’] - mandatory)
No description.
allow_flip_initial_MRI: a boolean ([‘Bool’] - mandatory)
No description.
allow_retry_initialization: a boolean ([‘Bool’] - mandatory)
No description.
init_translation_origin: a legal value ([‘Enum’] - mandatory)
No description.
voxel_size: a legal value ([‘Enum’] - mandatory)
No description.
cutoff_option: an integer (int or long) ([‘Int’] - mandatory)
No description.
nbiteration: an integer (int or long) ([‘Int’] - mandatory)
No description.

[Optional]

template: a file name ([‘File’] - optional)
No description.
ConvertSPMnormalizationToAIMS_target: a legal value ([‘Enum’] - optional)
No description.
ConvertSPMnormalizationToAIMS_normalized_volume: a file name ([‘File’] - optional)
No description.
ConvertSPMnormalizationToAIMS_removeSource: a boolean ([‘Bool’] - optional)
No description.
ReorientAnatomy_commissures_coordinates: a file name ([‘File’] - optional)
No description.

Outputs

transformation: a file name ([‘File (filename: input)’] - mandatory)
No description.
spm_transformation: a file name ([‘File (filename: input)’] - mandatory)
No description.
normalized_t1mri: a file name ([‘File (filename: input)’] - mandatory)
No description.
reoriented_t1mri: a file name ([‘File (filename: input)’] - mandatory)
No description.
ReorientAnatomy_output_commissures_coordinates: a file name ([‘File (filename: input)’] - optional)
No description.

Pipeline schema

../../../../_images/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline.png