morphologist.capsul.axon.morphologistprocess.morphologistProcess¶
morphologistProcess¶
Note
- Type ‘morphologistProcess.help()’ for a full description of this process parameters.
- Type ‘<morphologistProcess>.get_input_spec()’ for a full description of this process input trait types.
- Type ‘<morphologistProcess>.get_output_spec()’ for a full description of this process output trait types.
Inputs¶
[Mandatory]
- t1mri: a file name ([‘File’] - mandatory)
- No description.
- perform_segmentation: a boolean ([‘Bool’] - mandatory)
- No description.
- method_ACPC: a legal value ([‘Enum’] - mandatory)
- No description.
- normalized_referential: a file name ([‘File’] - mandatory)
- No description.
- tal_to_normalized_transform: a legal value ([‘List_Any’] - mandatory)
- No description.
- split_template: a file name ([‘File’] - mandatory)
- No description.
- perform_meshes_and_graphs: a boolean ([‘Bool’] - mandatory)
- No description.
- perform_sulci_SPAM_recognition: a boolean ([‘Bool’] - mandatory)
- No description.
- labels_translation_map: a file name ([‘File’] - mandatory)
- No description.
- left_labels_priors: a file name ([‘File’] - mandatory)
- No description.
- left_global_model: a file name ([‘File’] - mandatory)
- No description.
- left_local_model: a file name ([‘File’] - mandatory)
- No description.
- left_local_referentials: a file name ([‘File’] - mandatory)
- No description.
- left_direction_priors: a file name ([‘File’] - mandatory)
- No description.
- left_angle_priors: a file name ([‘File’] - mandatory)
- No description.
- left_translation_priors: a file name ([‘File’] - mandatory)
- No description.
- right_labels_priors: a file name ([‘File’] - mandatory)
- No description.
- right_global_model: a file name ([‘File’] - mandatory)
- No description.
- right_local_model: a file name ([‘File’] - mandatory)
- No description.
- right_local_referentials: a file name ([‘File’] - mandatory)
- No description.
- right_direction_priors: a file name ([‘File’] - mandatory)
- No description.
- right_angle_priors: a file name ([‘File’] - mandatory)
- No description.
- right_translation_priors: a file name ([‘File’] - mandatory)
- No description.
- sulci_file: a file name ([‘File’] - mandatory)
- No description.
[Optional]
- anterior_commissure: a legal value ([‘List_Float’] - optional)
- No description.
- posterior_commissure: a legal value ([‘List_Float’] - optional)
- No description.
- interhemispheric_point: a legal value ([‘List_Float’] - optional)
- No description.
- left_hemisphere_point: a legal value ([‘List_Float’] - optional)
- No description.
- older_MNI_normalization: a file name ([‘File’] - optional)
- No description.
- anatomical_template: a file name ([‘File’] - optional)
- No description.
- source_referential: a file name ([‘File’] - optional)
- No description.
- anatomical_template_skull_stripped: a file name ([‘File’] - optional)
- No description.
Outputs¶
- commissure_coordinates: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- job_file: a file name ([‘File (filename: input)’] - optional)
- No description.
- transformations_information: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- normalized_t1mri: a file name ([‘File (filename: input)’] - optional)
- No description.
- talairach_MNI_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- t1mri_nobias: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- hfiltered: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- white_ridges: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- variance: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- edges: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- field: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- meancurvature: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- histo_analysis: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- histo: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- brain_mask: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- skull_stripped: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- split_brain: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- talairach_ACPC_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_grey_white: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_grey_white: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_hemi_cortex: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_hemi_cortex: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_white_mesh: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_white_mesh: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_skeleton: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_roots: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_skeleton: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_roots: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_pial_mesh: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_pial_mesh: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_graph: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_sulci_voronoi: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_cortex_mid_interface: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_graph: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_sulci_voronoi: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_cortex_mid_interface: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_labelled_graph: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_posterior_probabilities: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_tal_to_global_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_t1_to_global_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- left_global_to_local_transforms: a directory name ([‘Directory (filename: input)’] - mandatory)
- No description.
- right_labelled_graph: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_posterior_probabilities: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_tal_to_global_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_t1_to_global_transform: a file name ([‘File (filename: input)’] - mandatory)
- No description.
- right_global_to_local_transforms: a directory name ([‘Directory (filename: input)’] - mandatory)
- No description.
- sulcal_morpho_measures: a file name ([‘File (filename: input)’] - mandatory)
- No description.
