morphologist.capsul.fslnormalization.FSLnormalizationPipeline¶

FSLnormalizationPipeline¶

Note

Type ‘FSLnormalizationPipeline.help()’ for a full description of this process parameters.
Type ‘<FSLnormalizationPipeline>.get_input_spec()’ for a full description of this process input trait types.
Type ‘<FSLnormalizationPipeline>.get_output_spec()’ for a full description of this process output trait types.

[Mandatory]

nodes_activation: a legal value ([‘ControllerTrait’] - mandatory): No description.
t1mri: a string or os.PathLike object ([‘File’] - mandatory): No description.
template: a string or os.PathLike object ([‘File’] - mandatory): No description.
alignment: a legal value ([‘Enum’] - mandatory): No description.
set_transformation_in_source_volume: a boolean ([‘Bool’] - mandatory): No description.
allow_flip_initial_MRI: a boolean ([‘Bool’] - mandatory): No description.
allow_retry_initialization: a boolean ([‘Bool’] - mandatory): No description.

[Optional]

NormalizeFSL_cost_function: a legal value ([‘Enum’] - optional): No description.
NormalizeFSL_search_cost_function: a legal value ([‘Enum’] - optional): No description.
NormalizeFSL_init_translation_origin: a legal value ([‘Enum’] - optional): No description.
ConvertFSLnormalizationToAIMS_standard_template: a legal value ([‘Enum’] - optional): No description.
ReorientAnatomy_commissures_coordinates: a string or os.PathLike object ([‘File’] - optional): No description.

transformation: a string or os.PathLike object ([‘File (filename: input)’] - mandatory): No description.
reoriented_t1mri: a string or os.PathLike object ([‘File (filename: input)’] - mandatory): No description.
NormalizeFSL_transformation_matrix: a string or os.PathLike object ([‘File (filename: input)’] - optional): No description.
NormalizeFSL_normalized_anatomy_data: a string or os.PathLike object ([‘File (filename: input)’] - optional): No description.
ConvertFSLnormalizationToAIMS_write: a string or os.PathLike object ([‘File (filename: input)’] - optional): No description.
ReorientAnatomy_output_commissures_coordinates: a string or os.PathLike object ([‘File (filename: input)’] - optional): No description.