morphologist.capsul.axon.morphologistprocess.morphologistProcess¶
morphologistProcess¶
Note
Type ‘morphologistProcess.help()’ for a full description of this process parameters.
Type ‘<morphologistProcess>.get_input_spec()’ for a full description of this process input trait types.
Type ‘<morphologistProcess>.get_output_spec()’ for a full description of this process output trait types.
Inputs¶
[Mandatory]
- t1mri: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- perform_segmentation: a boolean ([‘Bool’] - mandatory)
No description.
- method_ACPC: a legal value ([‘Enum’] - mandatory)
No description.
- normalized_referential: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- tal_to_normalized_transform: a legal value ([‘List_Any’] - mandatory)
No description.
- split_template: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- perform_meshes_and_graphs: a boolean ([‘Bool’] - mandatory)
No description.
- perform_sulci_recognition: a legal value ([‘Enum’] - mandatory)
No description.
- labels_translation_map: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_labels_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_model_file: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_param_file: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_global_model: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_local_model: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_local_referentials: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_direction_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_angle_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- left_translation_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_labels_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_model_file: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_param_file: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_global_model: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_local_model: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_local_referentials: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_direction_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_angle_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- right_translation_priors: a string or os.PathLike object ([‘File’] - mandatory)
No description.
- sulci_file: a string or os.PathLike object ([‘File’] - mandatory)
No description.
[Optional]
- anterior_commissure: a legal value ([‘List_Float’] - optional)
No description.
- posterior_commissure: a legal value ([‘List_Float’] - optional)
No description.
- interhemispheric_point: a legal value ([‘List_Float’] - optional)
No description.
- left_hemisphere_point: a legal value ([‘List_Float’] - optional)
No description.
- older_MNI_normalization: a string or os.PathLike object ([‘File’] - optional)
No description.
- anatomical_template: a string or os.PathLike object ([‘File’] - optional)
No description.
- source_referential: a string or os.PathLike object ([‘File’] - optional)
No description.
- anatomical_template_skull_stripped: a string or os.PathLike object ([‘File’] - optional)
No description.
Outputs¶
- commissure_coordinates: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- job_file: a string or os.PathLike object ([‘File (filename: input)’] - optional)
No description.
- transformations_information: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- normalized_t1mri: a string or os.PathLike object ([‘File (filename: input)’] - optional)
No description.
- talairach_MNI_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- t1mri_nobias: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- hfiltered: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- white_ridges: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- variance: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- edges: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- field: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- meancurvature: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- histo_analysis: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- histo: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- brain_mask: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- skull_stripped: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- split_brain: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- talairach_ACPC_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_grey_white: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_grey_white: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_hemi_cortex: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_hemi_cortex: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_white_mesh: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_white_mesh: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_skeleton: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_roots: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_skeleton: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_roots: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_pial_mesh: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_pial_mesh: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_graph: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_sulci_voronoi: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_cortex_mid_interface: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_graph: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_sulci_voronoi: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_cortex_mid_interface: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_labelled_graph: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_posterior_probabilities: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_tal_to_global_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_t1_to_global_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- left_global_to_local_transforms: a string or os.PathLike object ([‘Directory (filename: input)’] - mandatory)
No description.
- right_labelled_graph: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_posterior_probabilities: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_tal_to_global_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_t1_to_global_transform: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
- right_global_to_local_transforms: a string or os.PathLike object ([‘Directory (filename: input)’] - mandatory)
No description.
- sulcal_morpho_measures: a string or os.PathLike object ([‘File (filename: input)’] - mandatory)
No description.
