Nuclear Imaging

Have this documentation in a web page: right click -> open in a web browser. This will allow you to easily read the documentation while using brainvisa.

There are different ways in brainvisa, I suggest you initially use the basic method has a simpler interface. For this brainvisa menu -> preferences -> brainvisa -> userLevel -> select Basic. More options are available in advanced mode or expert.

Creating a database:

note: I urge you to read a few lines of quick start before continuing: An introduction to BrainVISA

brainvisa menu -> preferences -> databases
add button: Select the folder containing the database (eg folder name: KLS_brainvisaDataBase)
OK button, then brainvisa request an update of the database: click on update.

note: it is best to have only one selected database to avoid errors. Any time you want a different basis between input (for import) and output processing, you must select both database.

Import an image:

If you want to import Dicoms, use : Nuclear Imaging icon -> import directory -> import Dicoms of One Subject.
If you want to import images, like nii or img... use : Nuclear Imaging icon -> import directory -> import images of One Subject.
A single click lets you see the documentation in the right pane. A double click opens treatment.

Use a pipeline:

Nuclear Imaging icon -> pipeline name ... . A single click allows you to see the document in the right panel (a diagram showing the different processing steps that will undergo the image). A double click opens treatment.
click on the starting point of the pipeline (top left) for the dashboard with all the parameters of the pipeline.

Pet Treat image / Spect (normalization to MNI):

Preprocessing PET with whole Mri:

Preprocessing PET with segmented Grey Mri:

moana