.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/nomenclatureselection.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_examples_nomenclatureselection.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_nomenclatureselection.py:


Selection by nomenclature
-------------------------

Selecting graph nodes according a nomenclature

.. GENERATED FROM PYTHON SOURCE LINES 39-73



.. image-sg:: /auto_examples/images/sphx_glr_nomenclatureselection_001.png
   :alt: nomenclatureselection
   :srcset: /auto_examples/images/sphx_glr_nomenclatureselection_001.png
   :class: sphx-glr-single-img





.. code-block:: default


    from __future__ import absolute_import
    import anatomist.direct.api as anatomist
    from soma import aims
    from soma.qt_gui.qt_backend import Qt
    import os
    import sys

    runloop = Qt.QApplication.instance() is None

    a = anatomist.Anatomist()
    sh = aims.carto.Paths.shfjShared()
    nom = a.loadObject(os.path.join(sh, 'nomenclature', 'hierarchy',
                                    'sulcal_root_colors.hie'))
    graph = a.loadObject('Rbase.arg')
    w = a.createWindow('3D')
    w.addObjects(graph, add_graph_nodes=True)

    a.execute('SelectByNomenclature', names='PREFRONTAL_right', nomenclature=nom)

    # to unselect all
    # a.execute( 'Select' )

    if 'sphinx_gallery' in sys.modules:
        # display in matplotlib for sphinx_gallery
        w.camera(view_quaternion=[0.5, -0.5, -0.5, 0.5])
        w.windowConfig(view_size=[642, 384])
        w.sphinx_gallery_snapshot()
        runloop = False

    if runloop:
        Qt.QApplication.instance().exec_()
    if runloop or 'sphinx_gallery' in sys.modules:
        del w, graph, nom


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  3.618 seconds)


.. _sphx_glr_download_auto_examples_nomenclatureselection.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download sphx-glr-download-python

     :download:`Download Python source code: nomenclatureselection.py <nomenclatureselection.py>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

     :download:`Download Jupyter notebook: nomenclatureselection.ipynb <nomenclatureselection.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_