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PyAnatomist examples
====================



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    <div class="sphx-glr-thumbcontainer" tooltip="Loading and viewing a Volume with anatomist">

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  .. image:: /auto_examples/images/thumb/sphx_glr_volumetest_thumb.png
    :alt:

  :doc:`/auto_examples/volumetest`

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      <div class="sphx-glr-thumbnail-title">Volume manipulation</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Selecting graph nodes according a nomenclature">

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  .. image:: /auto_examples/images/thumb/sphx_glr_nomenclatureselection_thumb.png
    :alt:

  :doc:`/auto_examples/nomenclatureselection`

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      <div class="sphx-glr-thumbnail-title">Selection by nomenclature</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Loading and displaying a graph">

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  .. image:: /auto_examples/images/thumb/sphx_glr_graph_thumb.png
    :alt:

  :doc:`/auto_examples/graph`

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      <div class="sphx-glr-thumbnail-title">Graph manipulation</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Catching click events and plugging a callback">

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  .. image:: /auto_examples/images/thumb/sphx_glr_events_thumb.png
    :alt:

  :doc:`/auto_examples/events`

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      <div class="sphx-glr-thumbnail-title">Events handling</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Using the commands interpreter in a generic way">

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  .. image:: /auto_examples/images/thumb/sphx_glr_customcommands_thumb.png
    :alt:

  :doc:`/auto_examples/customcommands`

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      <div class="sphx-glr-thumbnail-title">Anatomist commands</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Adding custom menus in an object options">

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  .. image:: /auto_examples/images/thumb/sphx_glr_addMenuEntry_thumb.png
    :alt:

  :doc:`/auto_examples/addMenuEntry`

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      <div class="sphx-glr-thumbnail-title">Adding custom menus in an object options</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Fusion3D (mesh + texture from a volume) in Anatomist">

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  .. image:: /auto_examples/images/thumb/sphx_glr_fusion3D_thumb.png
    :alt:

  :doc:`/auto_examples/fusion3D`

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      <div class="sphx-glr-thumbnail-title">Fusion3D example</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Getting selected objects">

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  .. image:: /auto_examples/images/thumb/sphx_glr_selection_thumb.png
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  :doc:`/auto_examples/selection`

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      <div class="sphx-glr-thumbnail-title">Selection handling</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Activate actions in the current control of a window.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_activateaction_thumb.png
    :alt:

  :doc:`/auto_examples/activateaction`

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      <div class="sphx-glr-thumbnail-title">Action activation triggering API demo</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Creating a complete graph and nomenclature in Python">

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  .. image:: /auto_examples/images/thumb/sphx_glr_graph_building_thumb.png
    :alt:

  :doc:`/auto_examples/graph_building`

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      <div class="sphx-glr-thumbnail-title">Graph building</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to use Anatomist from a BrainVisa process, and get events from Anatomist even when it is run through a socket connection.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_bvProcessSocket_thumb.png
    :alt:

  :doc:`/auto_examples/bvProcessSocket`

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      <div class="sphx-glr-thumbnail-title">Using PyAnatomist in BrainVisa</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Loading, handling and viewing a Volume with aims and anatomist">

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  .. image:: /auto_examples/images/thumb/sphx_glr_aimsvolumetest_thumb.png
    :alt:

  :doc:`/auto_examples/aimsvolumetest`

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      <div class="sphx-glr-thumbnail-title">AIMS / Anatomist volume manipulation</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Using a mesh and modifying it while it is displayed">

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  .. image:: /auto_examples/images/thumb/sphx_glr_meshtest_thumb.png
    :alt:

  :doc:`/auto_examples/meshtest`

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      <div class="sphx-glr-thumbnail-title">Mesh manipulation</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Subclassing Anatomist objects">

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  .. image:: /auto_examples/images/thumb/sphx_glr_sphere_thumb.png
    :alt:

  :doc:`/auto_examples/sphere`

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      <div class="sphx-glr-thumbnail-title">Sphere example</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Creating a new custom fusion type in Anatomist">

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  .. image:: /auto_examples/images/thumb/sphx_glr_fusion_thumb.png
    :alt:

  :doc:`/auto_examples/fusion`

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      <div class="sphx-glr-thumbnail-title">Custom fusion example</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Updating the size and shape of an object interactively">

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  .. image:: /auto_examples/images/thumb/sphx_glr_ellipsoid_thumb.png
    :alt:

  :doc:`/auto_examples/ellipsoid`

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      <div class="sphx-glr-thumbnail-title">Ellipsoid example</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Plugging new conrols / actions in Anatomist views">

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  .. image:: /auto_examples/images/thumb/sphx_glr_control_thumb.png
    :alt:

  :doc:`/auto_examples/control`

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      <div class="sphx-glr-thumbnail-title">Custom controls example</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Display graph labels as 3D text annotations. This code is somewhat equivalent to what happens using the &#x27;A&#x27; key in selection control mode (actually this is an ancestor of the module which has been incorporated in Anatomist).">

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  .. image:: /auto_examples/images/thumb/sphx_glr_anagraphannotate_thumb.png
    :alt:

  :doc:`/auto_examples/anagraphannotate`

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      <div class="sphx-glr-thumbnail-title">3D Text annotations on a graph</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Customizing OpenGL parameters for objects">

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  .. image:: /auto_examples/images/thumb/sphx_glr_customopenglobject_thumb.png
    :alt:

  :doc:`/auto_examples/customopenglobject`

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      <div class="sphx-glr-thumbnail-title">Using OpenGL in PyAnatomist</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Complete example with a specific graphical interface that embeds an Anatomist window and a matplotlib widget. Shows a 4D volume and a curve of the values in a selected voxel or the mean of values in a selected region.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_volumeMeasures_thumb.png
    :alt:

  :doc:`/auto_examples/volumeMeasures`

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      <div class="sphx-glr-thumbnail-title">Measurements on a volume</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="An even simplified version of the anasimpleviewer application, which may also be used as a programming example. Its code is in the “bin/”” directory of the binary packages.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_anaevensimplerviewer_thumb.png
    :alt:

  :doc:`/auto_examples/anaevensimplerviewer`

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      <div class="sphx-glr-thumbnail-title">Build a custom simplified viewer based on Anatomist</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Drawing ROI on a mesh in a texture. Of course the SurfPaint module allows to do  it with much richer features, but this example demonstrates how to code the basics of it in a relatively small program.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_texturedrawing_thumb.png
    :alt:

  :doc:`/auto_examples/texturedrawing`

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      <div class="sphx-glr-thumbnail-title">Texture drawing</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="This example uses data of i2bm platform.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_anatomistapiTests_thumb.png
    :alt:

  :doc:`/auto_examples/anatomistapiTests`

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      <div class="sphx-glr-thumbnail-title">Anatomist api tests</div>
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    </div>


.. toctree::
   :hidden:

   /auto_examples/volumetest
   /auto_examples/nomenclatureselection
   /auto_examples/graph
   /auto_examples/events
   /auto_examples/customcommands
   /auto_examples/addMenuEntry
   /auto_examples/fusion3D
   /auto_examples/selection
   /auto_examples/activateaction
   /auto_examples/graph_building
   /auto_examples/bvProcessSocket
   /auto_examples/aimsvolumetest
   /auto_examples/meshtest
   /auto_examples/sphere
   /auto_examples/fusion
   /auto_examples/ellipsoid
   /auto_examples/control
   /auto_examples/anagraphannotate
   /auto_examples/customopenglobject
   /auto_examples/volumeMeasures
   /auto_examples/anaevensimplerviewer
   /auto_examples/texturedrawing
   /auto_examples/anatomistapiTests


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  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


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 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_