VIP: Volume Image Processing
fold_arg.h
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1/****************************************************************************
2 * PROJECT : V.I.P. Library
3 * MODULE NAME : vip/fold_arg.h * TYPE : Header
4 * AUTHOR : MANGIN J-F * CREATION : 02/03/1999
5 * VERSION : 1.4 * REVISION :
6 * LANGUAGE : C * EXAMPLE :
7 * DEVICE : Linux
8 ****************************************************************************
9 *
10 * DESCRIPTION : recuperation du format de graphe relationnel
11 * attribue sur les plis corticaux de la these de JF Mangin
12 *
13 ****************************************************************************
14 *
15 *
16 ****************************************************************************
17 * REVISIONS : DATE | AUTHOR | DESCRIPTION
18 *--------------------|--------------|---------------------------------------
19 * / / | |
20 ****************************************************************************/
21
22#ifndef VIP_FOLD_ARG_H
23#define VIP_FOLD_ARG_H
24
25#ifdef __cplusplus
26extern "C" {
27#endif
28
29#include <stdio.h>
30#include <stdlib.h>
31#include <string.h>
32#include <stdarg.h>
33#include <limits.h>
34#include <errno.h>
35#include <math.h>
36
37#include <vip/bucket.h>
38#include <vip/depla.h>
39#include <vip/talairach.h>
40
41#define HULL_SURFACE 290
42#define HULL_SURFACE_INDEX 0
43#define FORBIDEN_JUNCTION 99
44
45#include <vip/fold_arg/junction.h>
46#include <vip/fold_arg/cortex_rel.h>
47#include <vip/fold_arg/plidepassage.h>
48#include <vip/fold_arg/simplesurface.h>
49#include <vip/fold_arg/attribut.h>
50#define HULL_SURFACE 290
51#define HULL_SURFACE_INDEX 0
52 typedef struct fold_arg {
53 char name[1024];
54 SurfaceSimpleList *ss_list;
55 JunctionSet *jset;
56 PliDePassageSet *ppset;
57 CortexRelationSet *cortex_jset;
58 VipDeplacement gotoref;
59 Vip3DPoint_S16BIT min_ima;
60 Vip3DPoint_S16BIT max_ima;
61 Vip3DPoint_VFLOAT min_ref;
62 Vip3DPoint_VFLOAT max_ref;
63 Vip3DPoint_VFLOAT scaleref;
64 Vip3DPoint_VFLOAT vox;
65 int gotoref_filled;
66 int gonetoref;
67 int CAfilled;
68 int CPfilled;
69 int IHfilled;
70 Vip3DPoint_S16BIT CA;
71 Vip3DPoint_S16BIT CP;
72 Vip3DPoint_S16BIT IH;
73 } FoldArg;
74
75 /*
76 ss_list: liste des noeuds du graphe relationnel: surfaces simples
77 du squelette non externes;
78 jset: liste des jonctions topologiques entre ss
79 NB: les jonctions avec l'exterieur sont inclues dans cette liste;
80 cortex_jset: liste des jonctions corticales entre ss;
81 gotoref: transformation rigide 3D permettant de passer au referentiel commun
82 du modele (a priori defini a partir du referentiel d'inertie
83 du plan inter-hemispherique, autre possibilite moins
84 automatique: Talairach)
85 refmin, refmax: boite englobant le squelette dans le referentiel
86 commun. Elle permet la proportionnalisation ( a priori,
87 6 parametres ==> boite (-1,-1,-1,1,1,1)
88 */
89
90
91#include <vip/fold_arg/fold_arg_io.h>
92
93/*-------------------------------------------------------------------------*/
94extern int VipUnhookBijunctionFromJset(
95 BiJunction *ToUnhook,
96 JunctionSet *jset);
97/*-------------------------------------------------------------------------*/
98/*-------------------------------------------------------------------------*/
99extern JunctionSet *VipComputeFoldArgJunctionSet( Volume *vol,
100 SurfaceSimpleList *sslist,
101 int inside, int outside);
102/*-------------------------------------------------------------------------*/
103
104/*-------------------------------------------------------------------------*/
105extern CortexRelationSet *VipComputeFoldArgCortexRelationSet( Volume *vol,
106 SurfaceSimpleList *sslist );
107/*-------------------------------------------------------------------------*/
108
109/*-------------------------------------------------------------------------*/
110extern FoldArg *CreateFoldArgFromSquel( char *name, Volume *skeleton, int inside, int outside, int limitsssize,
111int compute_triang, char *rootsvoronoi_name);
112/*-------------------------------------------------------------------------*/
113/*-------------------------------------------------------------------------*/
114extern FoldArg *CreateEmptyFoldArg(char *name);
115/*-------------------------------------------------------------------------*/
116
117/*-------------------------------------------------------------------------*/
118extern PliDePassageSet *VipComputeFoldArgPliDePassageSet( SurfaceSimpleList *sslist,
119 JunctionSet *jset);
120/*-------------------------------------------------------------------------*/
121/*-------------------------------------------------------------------------*/
122extern PliDePassage *CreatePliDePassage(
123 int index1,
124 int index2,
125 Vip3DBucket_S16BIT *buck,
126 SurfaceSimpleList *sslist);
127/*-------------------------------------------------------------------------*/
128/*-------------------------------------------------------------------------*/
129extern int FillSSListPliDePassagePtr(
130 SurfaceSimpleList *ss_list,
131 PliDePassageSet *ppset);
132/*-------------------------------------------------------------------------*/
133/*-------------------------------------------------------------------------*/
134extern int VipComputeTmtkTriangulation( Volume *skeleton, FoldArg *arg);
135/*-------------------------------------------------------------------------*/
136
137/*-------------------------------------------------------------------------*/
138extern int VipComputeFoldArgSemanticAttributes(Volume *skeleton, FoldArg *arg,
139 int inside, int outside,
140 VipTalairach *tal);
141/*-------------------------------------------------------------------------*/
142
143/*-------------------------------------------------------------------------*/
144extern int VipComputeSSAttributes(Volume *depth, FoldArg *arg,
145 VipTalairach *tal);
146/*-------------------------------------------------------------------------*/
147
148/*-------------------------------------------------------------------------*/
149extern int VipComputeJunctionAttributes(Volume *depth, FoldArg *arg,
150 VipTalairach *tal);
151/*-------------------------------------------------------------------------*/
152
153/*-------------------------------------------------------------------------*/
154extern int VipComputePliDePassageAttributes(Volume *depth, FoldArg *arg,
155 VipTalairach *tal);
156/*-------------------------------------------------------------------------*/
157
158/*-------------------------------------------------------------------------*/
159extern int VipComputeCortexRelationAttributes(Volume *depth, FoldArg *arg,
160 VipTalairach *tal);
161/*-------------------------------------------------------------------------*/
162#ifdef __cplusplus
163}
164#endif
165
166#endif
cortex_rel.h
CortexRelationSet
struct cortexrelationset CortexRelationSet
VipDeplacement
struct deplacement VipDeplacement
CreateFoldArgFromSquel
FoldArg * CreateFoldArgFromSquel(char *name, Volume *skeleton, int inside, int outside, int limitsssize, int compute_triang, char *rootsvoronoi_name)
VipComputeFoldArgPliDePassageSet
PliDePassageSet * VipComputeFoldArgPliDePassageSet(SurfaceSimpleList *sslist, JunctionSet *jset)
VipComputeFoldArgCortexRelationSet
CortexRelationSet * VipComputeFoldArgCortexRelationSet(Volume *vol, SurfaceSimpleList *sslist)
VipComputeJunctionAttributes
int VipComputeJunctionAttributes(Volume *depth, FoldArg *arg, VipTalairach *tal)
FoldArg
struct fold_arg FoldArg
VipComputeCortexRelationAttributes
int VipComputeCortexRelationAttributes(Volume *depth, FoldArg *arg, VipTalairach *tal)
VipComputeFoldArgSemanticAttributes
int VipComputeFoldArgSemanticAttributes(Volume *skeleton, FoldArg *arg, int inside, int outside, VipTalairach *tal)
CreatePliDePassage
PliDePassage * CreatePliDePassage(int index1, int index2, Vip3DBucket_S16BIT *buck, SurfaceSimpleList *sslist)
VipComputePliDePassageAttributes
int VipComputePliDePassageAttributes(Volume *depth, FoldArg *arg, VipTalairach *tal)
FillSSListPliDePassagePtr
int FillSSListPliDePassagePtr(SurfaceSimpleList *ss_list, PliDePassageSet *ppset)
VipComputeSSAttributes
int VipComputeSSAttributes(Volume *depth, FoldArg *arg, VipTalairach *tal)
VipComputeTmtkTriangulation
int VipComputeTmtkTriangulation(Volume *skeleton, FoldArg *arg)
VipUnhookBijunctionFromJset
int VipUnhookBijunctionFromJset(BiJunction *ToUnhook, JunctionSet *jset)
VipComputeFoldArgJunctionSet
JunctionSet * VipComputeFoldArgJunctionSet(Volume *vol, SurfaceSimpleList *sslist, int inside, int outside)
CreateEmptyFoldArg
FoldArg * CreateEmptyFoldArg(char *name)
fold_arg_io.h
JunctionSet
struct junctionset JunctionSet
BiJunction
struct bijunction BiJunction
PliDePassage
struct plidepassage PliDePassage
PliDePassageSet
struct plidepassageset PliDePassageSet
SurfaceSimpleList
struct surfacesimplelist SurfaceSimpleList
fold_arg
Definition fold_arg.h:52
fold_arg::IH
Vip3DPoint_S16BIT IH
Definition fold_arg.h:72
fold_arg::scaleref
Vip3DPoint_VFLOAT scaleref
Definition fold_arg.h:63
fold_arg::gonetoref
int gonetoref
Definition fold_arg.h:66
fold_arg::ss_list
SurfaceSimpleList * ss_list
Definition fold_arg.h:54
fold_arg::CP
Vip3DPoint_S16BIT CP
Definition fold_arg.h:71
fold_arg::gotoref_filled
int gotoref_filled
Definition fold_arg.h:65
fold_arg::vox
Vip3DPoint_VFLOAT vox
Definition fold_arg.h:64
fold_arg::cortex_jset
CortexRelationSet * cortex_jset
Definition fold_arg.h:57
fold_arg::max_ref
Vip3DPoint_VFLOAT max_ref
Definition fold_arg.h:62
fold_arg::max_ima
Vip3DPoint_S16BIT max_ima
Definition fold_arg.h:60
fold_arg::CPfilled
int CPfilled
Definition fold_arg.h:68
fold_arg::name
char name[1024]
Definition fold_arg.h:53
fold_arg::gotoref
VipDeplacement gotoref
Definition fold_arg.h:58
fold_arg::IHfilled
int IHfilled
Definition fold_arg.h:69
fold_arg::min_ref
Vip3DPoint_VFLOAT min_ref
Definition fold_arg.h:61
fold_arg::CA
Vip3DPoint_S16BIT CA
Definition fold_arg.h:70
fold_arg::min_ima
Vip3DPoint_S16BIT min_ima
Definition fold_arg.h:59
fold_arg::ppset
PliDePassageSet * ppset
Definition fold_arg.h:56
fold_arg::CAfilled
int CAfilled
Definition fold_arg.h:67
fold_arg::jset
JunctionSet * jset
Definition fold_arg.h:55