BrainVISA software documentation index
======================================

.. image:: images/cort.png
  :align: left


User documentation
------------------

* :doc:`What's in BrainVISA <infrastructure>`

* :axonusr:`Axon <index.html>`

* :doc:`Anatomist <anatomist>`

* :doc:`Applicative toolboxes <applications>`

* BrainVISA toolboxes also include their own documentation embedded in BrainVISA user interface: toolboxes and processes docs are in in the main window right panel.
  For instance:

  * :morphoproc:`Morphologist <categories/morphologist/category_documentation.html>`
  * :morphoproc:`Cortical surface <categories/cortical_surface/category_documentation.html>`
  * :morphoproc:`FreeSurfer / Morphologist links <categories/freesurfer/category_documentation.html>`
  * :morphoproc:`BrainRat <categories/brainrat/category_documentation.html>`
  * :morphoproc:`Data management toolbox <categories/data management/category_documentation.html>`
  * :morphoproc:`Future Constellation <categories/constellation/category_documentation.html>`
  * :morphoproc:`Future DISCO <categories/disco/category_documentation.html>`

* :aimsdata:`AIMS <user_doc/index.html>` image processsing tools


Developer documentation
-----------------------

* See the :ref:`developers section <integrate>`


Index
-----

* :all_doc:`global index of all documentation provided on this website <doc_index.html>`
* :all_doc:`global index of all commandlines help <index_commands.html>`