..  BrainVISA website


:doc:`Outils pour la neuroimagerie disponibles pour la communauté <applications>`
=================================================================================


.. |morphologist| raw:: html

    <div class="imgbox imgbox-main">
      <a href="morphologist.html">
        <img src="_static/images/sulci_map.jpg" style="height: 200px;" />
      </a>
    </div>

.. |cortical_surface| raw:: html

    <div class="imgbox imgbox-main">
      <a href="cortical_surface.html">
        <img src="_static/images/hiphop138_L_left.jpg" style="height: 200px;" />
      </a>
    </div>

.. |anatomist| raw:: html

    <div class="imgbox imgbox-main">
      <a href="anatomist.html">
        <img src="_static/images/fusion_cutmesh_2.png" style="height: 200px;" />
      </a>
    </div>

.. |brainrat| raw:: html

    <div class="imgbox imgbox-main">
      <a href="brainrat.html">
        <img src="_static/images/brainrat_autorad.jpg" style="height: 200px;" />
      </a>
    </div>

.. |ric| raw:: html

    <div class="imgbox imgbox-main">
      <a href="applications.html#ric">
        <img src="http://www.mdbrain.org/personalpages/peter/front_image.jpg" style="height: 200px;" />
      </a>
    </div>

.. |vobi_one| raw:: html

    <div class="imgbox imgbox-main">
      <a href="applications.html#vobi_one">
        <img src="_static/images/vobi_one.png" style="height: 200px;" />
      </a>
    </div>

.. |intranat| raw:: html

    <div class="imgbox imgbox-main">
      <a href="applications.html#intranat">
        <img src="https://gin11-web.ujf-grenoble.fr/wp-content/uploads/2014/07/locateElectrodes2_anon.png" style="height: 200px;" />
      </a>
    </div>

.. |snapbase| raw:: html

    <div class="imgbox imgbox-main">
      <a href="tools.html#snapbase">
        <img src="images/snapbase.jpg" style="height: 200px;" />
      </a>
    </div>

.. |datamind| raw:: html

    <div class="imgbox imgbox-main">
      <a href="tools.html#datamind">
        <img src="images/datamind.png" style="height: 200px;" />
      </a>
    </div>

.. rst-class:: centered-cols

+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |morphologist|                                                               | |cortical_surface|                                                           | |anatomist|                                                                 |
|                                                                              |                                                                              |                                                                             |
| :doc:`Segmentation du cerveau et analyse sulcale <morphologist>`             | :doc:`Analyses sur la surface corticale <cortical_surface>`                  | :doc:`Visualisation de données <anatomist>`                                 |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |brainrat|                                                                   | |ric|                                                                        | |vobi_one|                                                                  |
|                                                                              |                                                                              |                                                                             |
| :doc:`Histologie 3D <brainrat>`                                              | :doc:`Epaisseur corticale, index de gyrification... <applications>`          | :doc:`Imagerie fonctionnelle optique <applications>`                        |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |intranat|                                                                   | |snapbase|                                                                   | |datamind|                                                                  |
|                                                                              |                                                                              |                                                                             |
| :doc:`Implantation d'électrones intracrâniennes <applications>`              | :ref:`Automatisation de vues de grandes bases de données <snapbase>`         | :ref:`Analyse statistique et data mining <datamind>`                        |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+


:doc:`Application à acces restreint <demos_wip>`
================================================

.. |constellation| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#constellation">
        <img src="_static/images/constellation/all_small_brains.jpg" style="height: 200px;" />
      </a>
    </div>

.. |disco| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#disco-constraints-based-diffeomorphic-registration">
        <img src="_static/images/disco.png" style="height: 200px;" />
      </a>
    </div>

.. |capsul| image:: _static/images/capsul.jpg
    :height: 200
    :target: ../capsul/index.html

.. |highres| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#highres-cortex-lamintion-of-the-cortex">
        <img src="images/highres-1.jpg" style="width: 148px;" />
        <img src="images/highres-2.jpg" style="width: 148px;" />
      </a>
    </div>

.. |nuclearimaging| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#nuclear-imaging">
        <img src="_static/images/pet_interface.png" style="height: 200px;" />
      </a>
    </div>

.. |baby| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#baby">
        <img src="images/baby.jpg" style="height: 200px;" />
      </a>
    </div>

.. |primate| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#primate">
        <img src="images/primate.png" style="width: 300px;" />
      </a>
    </div>

.. |connectomist| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#connectomist">
        <img src="images/fibers_clustering.jpg" style="height: 200px;" />
      </a>
    </div>

.. |sacha| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#sacha">
        <img src="images/logo_SACHA_white.jpg" style="width: 300px;" />
      </a>
    </div>

.. |whasa| raw:: html

    <div class="imgbox imgbox-main">
      <a href="demos_wip.html#whasa">
        <img src="images/whasa.jpg" style="height: 150px; position: relative; bottom: 0px; margin-top: 50px;" />
      </a>
    </div>

.. rst-class:: centered-cols

+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |constellation|                                                              | |disco|                                                                      | |baby|                                                                      |
|                                                                              |                                                                              |                                                                             |
| :ref:`constellation`                                                         | :ref:`disco`                                                                 | :ref:`baby`                                                                 |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |nuclearimaging|                                                             | |highres|                                                                    | |primate|                                                                   |
|                                                                              |                                                                              |                                                                             |
| :ref:`nuclear_imaging`                                                       | :ref:`highres_cortex`                                                        | :ref:`primate`                                                              |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+
| |connectomist|                                                               | |sacha|                                                                      | |whasa|                                                                     |
|                                                                              |                                                                              |                                                                             |
| :ref:`connectomist`                                                          | :ref:`sacha`                                                                 | :ref:`whasa`                                                                |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+-----------------------------------------------------------------------------+


:doc:`BrainVISA pour vous <infrastructure>`
===========================================

.. |axon| image:: _static/images/axon_schema.jpg
    :height: 200
    :target: infrastructure.html#whatsinbv

.. |dev| image:: images/cort_toolbox.png
    :height: 200
    :target: infrastructure.html#integrate

.. rst-class:: centered-cols

+------------------------------------------------------------------------------+------------------------------------------------------------------------------+
| |axon|                                                                       | |dev|                                                                        |
|                                                                              |                                                                              |
| :ref:`Qu'y a-t-il dans BrainVISA ? <whatsinbv>`                              | :ref:`Intégrez vos outils <integrate>`                                       |
+------------------------------------------------------------------------------+------------------------------------------------------------------------------+

Partenaires principaux
======================

.. raw:: html

  <table class="centered-cols docutils" style="width: 100%;">
    <colgroup>
    <col width="25%" />
    <col width="25%" />
    <col width="25%" />
    <col width="25%" />
    </colgroup>
    <tbody valign="top">
    <tr class="row-odd">
      <td>
        <div style="display: inline; vertical-align: middle;">
          <a href="http://i2bm.cea.fr">
            <img src="images/labs/cea.jpg" style="height: 70px;" /> &nbsp;
          </a>
          <div style="display: inline-block; vertical-align: middle;">
            <a href="http://i2bm.cea.fr/dsv/i2bm/Pages/NeuroSpin.aspx">
              <img src="images/labs/neurospin.png" style="height: 30px;" />
            </a><br/>
            <a href="http://i2bm.cea.fr/dsv/i2bm/Pages/MIRCen.aspx">
              <img src="images/labs/mircen.png" style="height: 30px;" />
            </a><br/>
            <a href="http://i2bm.cea.fr/dsv/i2bm/Pages/SHFJ.aspx">
              <img src="images/labs/shfj.png" style="height: 30px;" />
            </a>
          </div>
        </div>
        <p>The 3 labs of <a href="http://i2bm.cea.fr">CEA I2BM</a> are developing and maintaining most of the BrainVISA infrastructure.
        </p>
      </td>
      <td>
        <a href="http://cati-neuroimaging.com">
          <img src="images/labs/cati_logo.png" style="width: 250px;" />
        </a>
        <p>
          Le projet <a href="http://cati-neuroimaging.com">CATI Neuroimaging</a>, plateforme d’analyse pour les maladies neurodégénératives, a basé une partie de ses chaînes de traitement et boîtes à outil sur l’infrastructure de BrainVISA
        </p>
      </td>
      <td>
        <div style="align: block; position: relative; width: 300px; height: 150px;">
          <img src="images/labs/ifr49.png" style="height: 120px; position: absolute; left: 100px; top: 30px; z-index: 1;" />
          <img src="images/labs/inserm.png" style="height: 50px; position: absolute; left: 50px; z-index: 2;" />
        </div>
        <p>The former IFR49 supported by the <a href="http://inserm.fr">Inserm institute</a> has had a large contribution to BrainVISA
        </p>
      </td>
      <td>
        <div><a href="http://www.cnrs.fr/">
          <img src="images/labs/cnrs.png" style=""/>
        </div>
        <p>The <a href="http://www.cnrs.fr">CNRS</a> institute has been contributing through several labs, mainly the <a href="http://www.meca-brain.org/">MeCA group</a> and <a href="http://www.aramislab.fr/">ARAMIS lab</a>
        </p>
      </td>
    </tr>
    </tbody>
  </table>


Quick links
===========

.. image:: images/cort_contact.png
    :height: 100
    :align: left

.. toctree::
    :maxdepth: 1
    :hidden:

    news
    download
    documentation
    applications
    anatomist
    morphologist
    cortical_surface
    brainrat
    infrastructure
    tools
    changelog
    demos_wip
    publications

.. hlist::
    :columns: 3

    * :doc:`Nouveautés dans BrainVISA <news>`
    * :doc:`Téléchargements de BrainVISA <download>`
    * :doc:`Documentation générale <documentation>`
    * :doc:`Boîtes à outils applicatives <applications>`
    * :doc:`Anatomist, visualisation 3D interactive <anatomist>`
    * :doc:`morphologist`
    * :doc:`cortical_surface`
    * :doc:`brainrat`
    * :doc:`Qu’y a-t-il dans BrainVISA ? <infrastructure>`
    * :doc:`tools`
    * :ref:`Outils pour les développeurs <integrate>`
    * :doc:`Liste de changements dans BrainVISA <changelog>`
    * :doc:`Démos d'applications à diffusion restreinte <demos_wip>`
    * :doc:`support`
    * :doc:`publications`


Search
=======

.. image:: images/cort.png
    :height: 100
    :align: left
    :target: search.html

.. |english| image:: images/english.png
  :height: 20
  :target: index.html

* :ref:`Recherche <search>`
* :doc:`Informations légales <legal>`
* |english| :doc:`English website <index>`


:Release: |release|
:Date: |today|