Publications
============

.. image:: images/cort_museum.png
  :align: left

Bibliography
------------

* Look at: https://sites.google.com/view/jfmangin/

We have stopped maintaining a complete bibliography list. You can look in pubmed or google scholar, for instance.


Citing BrainVISA
----------------

BrainVISA / Axon
++++++++++++++++

.. |riviere09| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/Riviere-HBM09.pdf

.. [RIVIERE2009] D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. BrainVISA: **An extensible software environment for sharing multimodal neuroimaging data and processing tools**, In *Proc. 15th HBM*, 2009. |riviere09|

.. |cointepas10| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/Cointepas-HBM10_poster.pdf

.. [COINTEPAS2010] Y. Cointepas, D. Geffroy, N. Souedet, I. Denghien, and D. Rivière: **The BrainVISA project: a shared software development infrastructure for biomedical imaging research**, In *Proc. 16th HBM*, 2010. |cointepas10|

.. |geffroy11| image:: images/pdf.png
    :target: http://static.lnao.fr/papers/brainvisa_python_neuroscience.pdf

.. [GEFFROY2011] D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas: **BrainVISA: a complete software platform for neuroimaging**, In *Python in Neuroscience workshop*, Paris, Aug. 2011.



Soma-Workflow
+++++++++++++

.. |laguitton11| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/soma-workflow/poster_HBM_2011_somaworkflow.pdf

.. [LAGUITTON2011] S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas: **Soma-Workflow: open source software for easy access to parallel computing resources**, In *Proc. 17th HBM*, 2011. |laguitton11|

.. |laguitton11b| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/soma-workflow/MICCAI_2011_soma_workflow.pdf

.. [LAGUITTON2011B] S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas: **Soma-workflow: a unified and simple interface to parallel computing resources**, In *MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging*, Toronto, Sep. 2011. |laguitton11b|

.. |laguitton11c| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/soma-workflow/pythonneuro_2011_soma_workflow.pdf

.. [LAGUITTON2011C] S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas: **Soma-workflow: a unified and simple interface to parallel computing resources**, In *Python in Neuroscience workshop*, Paris, Aug. 2011. |laguitton11c|


Anatomist
+++++++++

.. |riviere11| image:: images/pdf.png
    :target: https://brainvisa.info/download/papers/anatomist_euroscipy_neuro.pdf

.. [RIVIERE2011] D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas: **Anatomist: a python framework for interactive 3D visualization of neuroimaging data**, In *Python in Neuroscience workshop*, 2011. |riviere11| :anatomist:`slides <pyanatomist_overview.pdf>`


Toolboxes
+++++++++

Some links may be found in applicative toolboxes documentation:

:doc:`morphologist`, `Cortical Surface <http://www.meca-brain.org/softwares/>`_, :doc:`brainrat`, etc.