aimsdata
5.1.2
Neuroimaging data handling
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#include <aims/data/cartodatavolume.h>
Classes | |
struct | Private |
Public Types | |
typedef T | value_type |
typedef T * | pointer |
basic pointer More... | |
typedef T **** | pointer4d |
4D-pointer More... | |
typedef T * | iterator |
basic iterator More... | |
typedef const T * | const_iterator |
basic constant iterator More... | |
typedef T & | reference |
basic reference More... | |
typedef const T & | const_reference |
basic constant reference More... | |
typedef size_t | size_type |
size of the basic type More... | |
typedef ptrdiff_t | difference_type |
difference type More... | |
Public Types inherited from carto::RCObject | |
typedef int | RefCounterType |
Public Member Functions | |
iterator | begin () |
const_iterator | begin () const |
iterator | end () |
const_iterator | end () const |
bool | empty () const |
AimsData (int dimx=1, int dimy=1, int dimz=1, int dimt=1, int borderw=0) | |
AimsData (int dimx, int dimy, int dimz, int dimt, int borderw, const carto::AllocatorContext &al) | |
AimsData (const AimsData< T > &other) | |
AimsData (const AimsData< T > &other, int borderw) | |
virtual | ~AimsData () |
AimsData (const carto::rc_ptr< carto::Volume< T > > &vol) | |
AimsData (const carto::VolumeRef< T > &vol) | |
AimsData< T > & | operator= (const carto::rc_ptr< carto::Volume< T > > &vol) |
AimsData< T > & | operator= (const AimsData< T > &) |
AimsData< T > & | operator= (const T &) |
carto::VolumeRef< T > & | volume () |
const carto::VolumeRef< T > & | volume () const |
operator carto::rc_ptr< carto::Volume< T > > & () | |
cast to Volume More... | |
operator const carto::rc_ptr< carto::Volume< T > > & () const | |
operator carto::VolumeRef< T > & () | |
operator const carto::VolumeRef< T > & () const | |
const carto::AllocatorContext & | allocator () const |
int | dimX () const |
int | dimY () const |
int | dimZ () const |
int | dimT () const |
float | sizeX () const |
float | sizeY () const |
float | sizeZ () const |
float | sizeT () const |
void | setSizeX (float sizex) |
void | setSizeY (float sizey) |
void | setSizeZ (float sizez) |
void | setSizeT (float sizet) |
void | setSizeXYZT (float sizex=1.0f, float sizey=1.0f, float sizez=1.0f, float sizet=1.0f) |
void | setSizeXYZT (const AimsData< T > &other) |
const aims::Header * | header () const |
aims::Header * | header () |
void | setHeader (aims::Header *hdr) |
reference | operator[] (size_type n) |
const_reference | operator[] (size_type n) const |
reference | operator() (size_type x=0, size_type y=0, size_type z=0, size_type t=0) |
const_reference | operator() (size_type x=0, size_type y=0, size_type z=0, size_type t=0) const |
reference | operator() (const Point4d &pt) |
const_reference | operator() (const Point4d &pt) const |
reference | operator() (const Point4dl &pt) |
const_reference | operator() (const Point4dl &pt) const |
reference | operator() (const Point3d &pt) |
const_reference | operator() (const Point3d &pt) const |
reference | operator() (const Point3dl &pt) |
const_reference | operator() (const Point3dl &pt) const |
reference | operator() (const Point2d &pt) |
const_reference | operator() (const Point2d &pt) const |
reference | operator() (const Point2dl &pt) |
const_reference | operator() (const Point2dl &pt) const |
T | minimum () const |
T | maximum () const |
T | minIndex (int *x, int *y, int *z, int *t) const |
T | maxIndex (int *x, int *y, int *z, int *t) const |
void | fillBorder (const T &val) |
AimsData< T > | clone () const |
AimsData< T > | cross (const AimsData< T > &other) |
AimsData< T > & | transpose () |
int | borderWidth () const |
Size of the border. More... | |
int | oFirstPoint () const |
Offset from the start of the allocated memory to the first point. More... | |
int | oLine () const |
Offset between 2 consecutive lines. More... | |
int | oPointBetweenLine () const |
Offset between the end of a line and the start of the consecutive line. More... | |
int | oSlice () const |
Offset between 2 consecutive slices. More... | |
int | oLineBetweenSlice () const |
Number of lines between 2 consecutive slices. More... | |
int | oVolume () const |
Offset between 2 consecutive volumes. More... | |
int | oSliceBetweenVolume () const |
Number of slices between 2 consecutive volumes. More... | |
const std::vector< int > & | borders () const |
Sizes of the border. More... | |
Public Member Functions inherited from carto::RCObject | |
RCObject () | |
RCObject (const RCObject &) | |
RCObject & | operator= (const RCObject &) |
virtual | ~RCObject () |
Definition at line 69 of file cartodatavolume.h.
typedef const T* AimsData< T >::const_iterator |
basic constant iterator
Definition at line 85 of file cartodatavolume.h.
typedef const T& AimsData< T >::const_reference |
basic constant reference
Definition at line 89 of file cartodatavolume.h.
typedef ptrdiff_t AimsData< T >::difference_type |
difference type
Definition at line 93 of file cartodatavolume.h.
basic iterator
Definition at line 83 of file cartodatavolume.h.
basic pointer
Definition at line 79 of file cartodatavolume.h.
4D-pointer
Definition at line 81 of file cartodatavolume.h.
basic reference
Definition at line 87 of file cartodatavolume.h.
size of the basic type
Definition at line 91 of file cartodatavolume.h.
typedef T AimsData< T >::value_type |
Definition at line 77 of file cartodatavolume.h.
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Definition at line 367 of file cartodatavolume.h.
References AimsData< T >::Private::header, and carto::rc_ptr< class >::reset().
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Definition at line 384 of file cartodatavolume.h.
References AimsData< T >::Private::header, and carto::rc_ptr< class >::reset().
Definition at line 402 of file cartodatavolume.h.
References AimsData< T >::Private::header.
Definition at line 413 of file cartodatavolume.h.
References carto::VolumeRef< class >::copyHeaderFrom(), AimsData< T >::dimT(), AimsData< T >::dimX(), AimsData< T >::dimY(), AimsData< T >::dimZ(), AimsData< T >::Private::header, carto::VolumeRef< class >::header(), carto::rc_ptr< class >::reset(), and AimsData< T >::volume().
Definition at line 440 of file cartodatavolume.h.
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Definition at line 448 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 458 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 687 of file cartodatavolume.h.
Referenced by aims::operator>>().
Definition at line 322 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin().
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Definition at line 330 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin().
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Sizes of the border.
Definition at line 1159 of file cartodatavolume.h.
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Size of the border.
Definition at line 1141 of file cartodatavolume.h.
Referenced by AimsData< T >::cross(), aims::triInf(), and aims::triSup().
Definition at line 1053 of file cartodatavolume.h.
References carto::DictionaryInterface::copyProperties(), AimsData< T >::Private::header, carto::VolumeRef< class >::header(), carto::Object::reference(), carto::rc_ptr< class >::reset(), and transfer().
Referenced by aims::decOrder(), and aims::incOrder().
Definition at line 1087 of file cartodatavolume.h.
References ASSERT, AimsData< T >::borderWidth(), AimsData< T >::dimT(), AimsData< T >::dimX(), AimsData< T >::dimY(), and AimsData< T >::dimZ().
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Definition at line 566 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 542 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 550 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 558 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 360 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin(), and carto::VolumeRef< class >::end().
Definition at line 338 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::VolumeRef< class >::getSizeT(), carto::VolumeRef< class >::getSizeX(), carto::VolumeRef< class >::getSizeY(), and carto::VolumeRef< class >::getSizeZ().
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Definition at line 349 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::VolumeRef< class >::getSizeT(), carto::VolumeRef< class >::getSizeX(), carto::VolumeRef< class >::getSizeY(), and carto::VolumeRef< class >::getSizeZ().
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Definition at line 1019 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::const_ref< class >::isNull(), and carto::VolumeRef< class >::refVolume().
Referenced by AimsData< T >::transpose().
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Definition at line 704 of file cartodatavolume.h.
References carto::PointerObject< class >::getValue().
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Definition at line 695 of file cartodatavolume.h.
References AimsData< T >::header().
Referenced by AimsData< T >::header(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), and AimsData< T >::Private::~Private().
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Definition at line 915 of file cartodatavolume.h.
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Definition at line 971 of file cartodatavolume.h.
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Definition at line 907 of file cartodatavolume.h.
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Definition at line 923 of file cartodatavolume.h.
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Offset from the start of the allocated memory to the first point.
Definition at line 1167 of file cartodatavolume.h.
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Offset between 2 consecutive lines.
Definition at line 1176 of file cartodatavolume.h.
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Number of lines between 2 consecutive slices.
Definition at line 1200 of file cartodatavolume.h.
AimsData< T >::operator carto::rc_ptr< carto::Volume< T > > & |
cast to Volume
Definition at line 300 of file cartodatavolume.h.
AimsData< T >::operator carto::VolumeRef< T > & |
Definition at line 314 of file cartodatavolume.h.
AimsData< T >::operator const carto::rc_ptr< carto::Volume< T > > & |
Definition at line 293 of file cartodatavolume.h.
AimsData< T >::operator const carto::VolumeRef< T > & |
Definition at line 307 of file cartodatavolume.h.
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Definition at line 872 of file cartodatavolume.h.
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Definition at line 881 of file cartodatavolume.h.
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Definition at line 890 of file cartodatavolume.h.
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Definition at line 899 of file cartodatavolume.h.
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Definition at line 836 of file cartodatavolume.h.
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Definition at line 845 of file cartodatavolume.h.
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Definition at line 854 of file cartodatavolume.h.
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Definition at line 863 of file cartodatavolume.h.
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Definition at line 800 of file cartodatavolume.h.
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Definition at line 809 of file cartodatavolume.h.
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Definition at line 818 of file cartodatavolume.h.
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Definition at line 827 of file cartodatavolume.h.
reference AimsData< T >::operator() | ( | size_type | x = 0 , |
size_type | y = 0 , |
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size_type | z = 0 , |
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size_type | t = 0 |
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const_reference AimsData< T >::operator() | ( | size_type | x = 0 , |
size_type | y = 0 , |
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size_type | z = 0 , |
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size_type | t = 0 |
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) | const |
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Definition at line 485 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 469 of file cartodatavolume.h.
Referenced by aims::AimsFastAllocationData< T >::operator=().
Definition at line 501 of file cartodatavolume.h.
const_reference AimsData< T >::operator[] | ( | size_type | n | ) | const |
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Offset between the end of a line and the start of the consecutive line.
Definition at line 1184 of file cartodatavolume.h.
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Offset between 2 consecutive slices.
Definition at line 1192 of file cartodatavolume.h.
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Number of slices between 2 consecutive volumes.
Definition at line 1216 of file cartodatavolume.h.
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Offset between 2 consecutive volumes.
Definition at line 1208 of file cartodatavolume.h.
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Definition at line 721 of file cartodatavolume.h.
References carto::TypedObject< class >::clearProperties(), aims::PythonHeader::copy(), carto::TypedObject< class >::getProperty(), carto::const_ref< class >::isNull(), and carto::TypedObject< class >::setProperty().
Referenced by aims::FdfReader< T >::read(), aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::read(), aims::ImasVolFormat< T >::read(), and AimsData< T >::transpose().
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Definition at line 658 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 622 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
Definition at line 679 of file cartodatavolume.h.
References carto::VolumeRef< class >::getVoxelSize(), and AimsData< T >::volume().
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Definition at line 671 of file cartodatavolume.h.
Referenced by aims::Sinogram< T >::extractSino(), aims::Sinogram< T >::extractView(), aims::Sinogram< T >::getPlaneInDisplayMode(), aims::FdfReader< T >::read(), aims::SpmReader< T >::read(), and AimsData< T >::transpose().
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Definition at line 634 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 646 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 610 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 574 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 586 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 598 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
Definition at line 1109 of file cartodatavolume.h.
References aims::PythonHeader::cloneHeader(), AimsData< T >::fillBorder(), carto::TypedObject< class >::hasProperty(), carto::TypedObject< class >::removeProperty(), AimsData< T >::setHeader(), and AimsData< T >::setSizeXYZT().
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Definition at line 526 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), carto::getObjectHeader(), aims::hasSameDim(), operator*(), operator+(), operator-(), aims::VolumeFormat< T >::read(), AimsData< T >::setSizeXYZT(), aims::SpmWriter< T >::write(), and aims::SomaIOAimsDataFormat< T >::write().
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Definition at line 534 of file cartodatavolume.h.