problem with AimsSubVolume

AIMS library and commands usage

Moderators: riviere, denghien

SylvainT
Posts: 73
Joined: Mon Feb 13, 2006 6:37 pm
Location: INT, Marseille, France

problem with AimsSubVolume

Postby SylvainT » Tue May 18, 2010 1:22 pm

Hi all!

I use AimsSubVolume on a T1 image, and the resulting cropped image seems to have a problem: when I display it in anatomist, it looks as it is "cut" (see image below)

cropped.png
cropped.png (25.65 KiB) Viewed 4011 times


and anatomist gives me the following message:
Warning: storage_to_memory transformation in NIFTI1 file seems to be wrong
(which does not appear on the image before cropping with AimsSubVolume)

I checked with other viewers (spm, fslview), and they do "see" the whole volume, meaning that the data is actually there...

I'm sending you (Denis & Dominique) via email a link to download the files so that you can take a look at them...

Thanks in advance for your help,

Sylvain

User avatar
riviere
Site Admin
Posts: 1358
Joined: Tue Jan 06, 2004 12:21 pm
Location: CEA NeuroSpin, Saint Aubin, France
Contact:

Re: problem with AimsSubVolume

Postby riviere » Tue May 18, 2010 7:43 pm

Hi sylvain,
I think this bug was found after the BrainVisa courses last november, and is fixed for the next version. It was a bug when reorienting / resampling a volume + Nifti reader.
The images seem to be displayed entirely with the future anatomist:
save1.jpg
save1.jpg (182.58 KiB) Viewed 3993 times

You 'll have to wait a few more for the next version (we are still struggling with the last bugs).
Denis


Return to “AIMS”

Who is online

Users browsing this forum: No registered users and 2 guests