#include <aims/roi/roigtm.h>

Inheritance diagram for aims::RoiGtm:

Collaboration diagram for aims::RoiGtm:

[legend]

Public Types
enum	MaskType { threshold_on_closed, threshold_on_smoothed, get_from_file }

Public Types inherited from Graph
typedef std::set< Vertex *>	VSet

typedef std::set< Edge *>	ESet

typedef carto::rc_ptr< GraphFactory >	FactoryPtr

typedef VSet::value_type	value_type

typedef VSet::pointer	pointer

typedef VSet::reference	reference

typedef VSet::const_reference	const_reference

typedef VSet::iterator	iterator

typedef VSet::const_iterator	const_iterator

typedef VSet::reverse_iterator	reverse_iterator

typedef VSet::const_reverse_iterator	const_reverse_iterator

Public Types inherited from carto::SyntaxedObject< T >
typedef internal::SyntaxedObjectSwitch< T, SUPERSUBCLASS(Interface, T)>::ContentType	ContentType

Public Member Functions
	RoiGtm (RoiSelector *roiSel=NULL, float trans=-1, float axial=-1)

virtual	~RoiGtm ()

void	stamp (std::string &selector_fname, std::string &roi_fname)

AimsRoi *	doit (AimsRoi &roi, MaskType m=threshold_on_smoothed, AimsData< float > *smo=NULL)

void	streamout ()

AimsData< float >	getMatrix ()

AimsData< float >	getInvMatrix ()

std::vector< std::string >	getStructNameList ()

AimsRoi &	getMaskRoi ()

void	setMaskRoi (AimsRoi *roi)

void	editionSet ()

void	computationSet ()

carto::SyntaxSet &	syntax ()

Public Member Functions inherited from Graph
	Graph (const std::string &s="")

	Graph (const FactoryPtr factory, const std::string &s="")

virtual	~Graph ()

void	extract (Graph &graph, InputIterator iv1, InputIterator iv2)

void	clear ()

Vertex *	addVertex (const std::string &s="")

Vertex *	cloneVertex (const Vertex *vertex)

bool	hasVertex (const Vertex *vertex) const

void	removeVertex (Vertex *vertex)

Vertex *	randomVertex () const

const std::set< Vertex *> &	vertices () const

std::set< Vertex *>	getVerticesWith (const std::string &s) const

std::set< Vertex *>	getVerticesWith (const std::string &s, const T &t) const

Edge *	addUndirectedEdge (Vertex vertex1, Vertex vertex2, std::string s)

Edge *	addEdge (Vertex vertex1, Vertex vertex2, std::string s="")

Edge *	addDirectedEdge (Vertex vertex1, Vertex vertex2, std::string s)

bool	hasEdge (const Edge *edge) const

void	removeEdge (Edge *edge)

const std::set< Edge *> &	edges () const

std::set< Edge *>	edges (const Vertex vertex1, const Vertex vertex2) const

std::set< Edge *>	getEdgesWith (const std::string &s) const

std::set< Edge *>	getEdgesWith (const std::string &s, const T &t) const

iterator	begin ()

iterator	end ()

const_iterator	begin () const

const_iterator	end () const

reverse_iterator	rbegin ()

reverse_iterator	rend ()

const_reverse_iterator	rbegin () const

const_reverse_iterator	rend () const

size_t	order () const

size_t	size () const __attribute__((__deprecated__("use edgeSize() for " "the number of edges. In a future release

size_t	size () will return the " "number properties as it does in GenericObject")))

size_t	edgesSize () const

virtual bool	isUndirected () const

virtual bool	isDirected () const

virtual bool	check (const carto::SyntaxSet &syntax, std::set< std::string > &missing) const

void	clear ()

Vertex *	addVertex (const std::string &s="")

Vertex *	cloneVertex (const Vertex *vertex)

bool	hasVertex (const Vertex *vertex) const

void	removeVertex (Vertex *vertex)

Vertex *	randomVertex () const

const std::set< Vertex *> &	vertices () const

std::set< Vertex *>	getVerticesWith (const std::string &s) const

std::set< Vertex *>	getVerticesWith (const std::string &s, const T &t) const

Edge *	addUndirectedEdge (Vertex vertex1, Vertex vertex2, std::string s)

Edge *	addEdge (Vertex vertex1, Vertex vertex2, std::string s="")

Edge *	addDirectedEdge (Vertex vertex1, Vertex vertex2, std::string s)

bool	hasEdge (const Edge *edge) const

void	removeEdge (Edge *edge)

const std::set< Edge *> &	edges () const

std::set< Edge *>	edges (const Vertex vertex1, const Vertex vertex2) const

std::set< Edge *>	getEdgesWith (const std::string &s) const

std::set< Edge *>	getEdgesWith (const std::string &s, const T &t) const

iterator	begin ()

iterator	end ()

const_iterator	begin () const

const_iterator	end () const

reverse_iterator	rbegin ()

reverse_iterator	rend ()

const_reverse_iterator	rbegin () const

const_reverse_iterator	rend () const

size_t	order () const

size_t	size () const __attribute__((__deprecated__("use edgeSize() for " "the number of edges. In a future release

size_t	size () will return the " "number properties as it does in GenericObject")))

size_t	edgesSize () const

virtual bool	isUndirected () const

virtual bool	isDirected () const

virtual bool	check (const carto::SyntaxSet &syntax, std::set< std::string > &missing) const

Public Member Functions inherited from GraphObject
virtual	~GraphObject ()

Public Member Functions inherited from carto::SyntaxedObject< T >
	SyntaxedObject (const std::string &s)

	SyntaxedObject (const SyntaxedObject &x)

	SyntaxedObject (const SyntaxedObject< PropertySet > &x)

Protected Attributes
carto::SyntaxSet	sGtm

Protected Attributes inherited from Graph
FactoryPtr	_factory

Additional Inherited Members
Protected Member Functions inherited from GraphObject
	GraphObject (const std::string &s)

	GraphObject (const GraphObject &x)

Detailed Description

Definition at line 51 of file roigtm.h.

Member Enumeration Documentation

◆ MaskType

enum aims::RoiGtm::MaskType

Enumerator
threshold_on_closed
threshold_on_smoothed
get_from_file

Definition at line 57 of file roigtm.h.

Constructor & Destructor Documentation

◆ RoiGtm()

aims::RoiGtm::RoiGtm	(	RoiSelector *	roiSel = `NULL`,
		float	trans = `-1`,
		float	axial = `-1`
	)

◆ ~RoiGtm()

virtual aims::RoiGtm::~RoiGtm ( )

virtual

Member Function Documentation

◆ computationSet()

void aims::RoiGtm::computationSet ( )

inline

Definition at line 83 of file roigtm.h.

◆ doit()

AimsRoi* aims::RoiGtm::doit	(	AimsRoi &	roi,
		MaskType	m = `threshold_on_smoothed`,
		AimsData< float > *	smo = `NULL`
	)

◆ editionSet()

void aims::RoiGtm::editionSet ( )

inline

Definition at line 82 of file roigtm.h.

◆ getInvMatrix()

AimsData<float> aims::RoiGtm::getInvMatrix ( )

◆ getMaskRoi()

AimsRoi& aims::RoiGtm::getMaskRoi ( )

inline

Definition at line 78 of file roigtm.h.

◆ getMatrix()

AimsData<float> aims::RoiGtm::getMatrix ( )

◆ getStructNameList()

std::vector<std::string> aims::RoiGtm::getStructNameList ( )

◆ setMaskRoi()

void aims::RoiGtm::setMaskRoi ( AimsRoi * roi )

inline

Definition at line 79 of file roigtm.h.

◆ stamp()

void aims::RoiGtm::stamp	(	std::string &	selector_fname,
		std::string &	roi_fname
	)

◆ streamout()

void aims::RoiGtm::streamout ( )

◆ syntax()

carto::SyntaxSet& aims::RoiGtm::syntax ( )

inline

Definition at line 85 of file roigtm.h.

Member Data Documentation

◆ sGtm

carto::SyntaxSet aims::RoiGtm::sGtm

protected

Definition at line 89 of file roigtm.h.

The documentation for this class was generated from the following file:

aims/roi/roigtm.h

Public Types

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ MaskType

Constructor & Destructor Documentation

◆ RoiGtm()

◆ ~RoiGtm()

Member Function Documentation

◆ computationSet()

◆ doit()

◆ editionSet()

◆ getInvMatrix()

◆ getMaskRoi()

◆ getMatrix()

◆ getStructNameList()

◆ setMaskRoi()

◆ stamp()

◆ streamout()

◆ syntax()

Member Data Documentation

◆ sGtm