clusterArg.h

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#ifndef AIMS_ROI_CLUSTERARG_H
#define AIMS_ROI_CLUSTERARG_H

#include <aims/data/data.h>
#include <aims/connectivity/connectivity.h>
#include <float.h>

class Graph;

namespace aims
{

  class ClusterArgMaker
  {
  public:
    ClusterArgMaker( const std::string & outfilename, Connectivity::Type conn 
                     = Connectivity::CONNECTIVITY_18_XYZ, 
                     int minsz = 0, const std::string & mtxfile = "", 
                     bool mkmesh = true, float maxclear = 5., 
                     float maxerr = 0.1, uint minfac = 50, bool bin = false, 
                     float low = -FLT_MAX, float up = FLT_MAX );
    ~ClusterArgMaker();

    void setFilename( const std::string & n ) { _fileout = n; }
    std::string filename() const { return( _fileout ); }
    void setConnectivity( Connectivity::Type conn ) { _connectivity = conn; }
    Connectivity::Type connectivity() const { return( _connectivity ); }
    void setMinClusterSize( int sz ) { _minsize = sz; }
    int minClusterSize() const { return( _minsize ); }
    void setTransformationFilename( const std::string & mtxfile )
    { _matrix = mtxfile; }
    std::string transformationFilename() const { return( _matrix); }
    void setMeshFlag( bool x ) { _domesh = x; }
    bool meshFlag() const { return( _domesh ); }
    void setDecimationMaxClearance( float x ) { _deciMaxClearance = x; }
    float decimationMaxClearance() const { return( _deciMaxClearance ); }
    void setDecimationMaxError( float x ) { _deciMaxError = x; }
    float decimationMaxError() const { return( _deciMaxError ); }
    void setMinFacetNumber( uint x ) { _minFacetNumber = x; }
    uint minFacetNumber() const { return( _minFacetNumber ); }
    void setBinarize( bool x ) { _binarize = x; }
    bool binarize() const { return( _binarize ); }
    void setLowThreshold( float x ) { _lowth = x; }
    float lowThreshold() const { return( _lowth ); }
    void setUpperThershold( float x ) { _upth = x; }
    float upperThreshold() const { return( _upth ); }

    template<typename T> void make( Graph & gr, const AimsData<T> & data );

  private:
    std::string         _fileout;
    Connectivity::Type  _connectivity;
    int                 _minsize;
    std::string         _matrix;
    bool                _domesh;
    float               _deciMaxClearance;
    float               _deciMaxError;
    uint                _minFacetNumber;
    bool                _binarize;
    float               _lowth;
    float               _upth;
  };

}


#endif