aimsdata  5.0.5
Neuroimaging data handling
component.h
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33 
34 #ifndef AIMS_CONNECTIVITY_COMPONENT_H
35 #define AIMS_CONNECTIVITY_COMPONENT_H
36 
37 
38 #include <aims/config/aimsdata_config.h>
39 #include <aims/connectivity/connectivity.h>
40 
41 template <typename T> class AimsBucket;
42 class Void;
43 template <typename T> class AimsData;
44 
45 namespace aims
46 {
47 
48  template <typename T> class BucketMap;
49 
50  template <typename T, typename O>
51  class ConnectedComponentEngine {
52 
53  private :
54  ConnectedComponentEngine();
55  };
56 
57  // Specialization
58  template <typename T, typename O>
59  class ConnectedComponentEngine<AimsData<T>, AimsData<O> > {
60 
61  public :
62  static void filterInFrame( const AimsData<T>& cc,
63  AimsData<O>& out,
64  std::map<O, size_t>& valids,
65  int t,
66  bool verbose = true );
67 
68  static void connectedInFrame( const AimsData<T>& data,
69  AimsData<O>& out,
70  Connectivity::Type connectivity,
71  std::multimap<size_t, O>& compSizes,
72  int t,
73  const T & backgrnd = 0, bool bin = true,
74  bool verbose = true );
75 
76  static void connected( const AimsData<T>& data,
77  AimsData<O>& out,
78  aims::Connectivity::Type connectivity,
79  std::map<O, size_t>& valids,
80  const T & backgrnd = 0, bool bin = true,
81  size_t minSize = 0, size_t maxSize = 0, size_t numMax = 0,
82  bool verbose = true );
83 
84 
85  static void connected( const AimsData<T>& data,
86  AimsData<O>& out,
87  aims::Connectivity::Type connectivity,
88  const T & backgrnd = 0, bool bin = true,
89  size_t minSize = 0, size_t maxSize = 0, size_t numMax = 0,
90  bool verbose = true );
91 
92  private:
93  ConnectedComponentEngine();
94  };
95 
96  template<typename T, typename O>
97  inline
98  void ConnectedComponentEngine<AimsData<T>, AimsData<O> >::connected( const AimsData<T>& data,
99  AimsData<O>& out,
100  aims::Connectivity::Type connectivity,
101  const T & backgrnd, bool bin,
102  size_t minSize, size_t maxSize, size_t numMax,
103  bool verbose )
104  {
105  std::map<O, size_t> valids;
106  ConnectedComponentEngine<AimsData<T>, AimsData<O> >::connected(data,
107  out,
108  connectivity,
109  valids,
110  backgrnd, bin, minSize, maxSize,
111  numMax, verbose);
112  }
113 
114  template<typename T>
115  inline
116  void AimsConnectedComponent( AimsData<T>& data,
117  aims::Connectivity::Type connectivity,
118  std::map<T, size_t>& valids,
119  const T & backgrnd = 0, bool bin = true,
120  size_t minSize = 0, size_t maxSize = 0, size_t numMax = 0,
121  bool verbose = true )
122  {
123  ConnectedComponentEngine<AimsData<T>, AimsData<T> >::connected(data,
124  data,
125  connectivity,
126  valids,
127  backgrnd, bin, minSize, maxSize,
128  numMax, verbose);
129  }
130 
131  template<typename T>
132  inline
133  void AimsConnectedComponent( AimsData<T>& data,
134  aims::Connectivity::Type connectivity,
135  const T & backgrnd = 0, bool bin = true,
136  size_t minSize = 0, size_t maxSize = 0, size_t numMax = 0,
137  bool verbose = true )
138  {
139  std::map<T, size_t> valids;
140 
141  ConnectedComponentEngine<AimsData<T>, AimsData<T> >::connected(data,
142  data,
143  connectivity,
144  valids,
145  backgrnd, bin, minSize, maxSize,
146  numMax, verbose);
147  }
148 
149  template<typename T>
150  void AimsConnectedComponent( BucketMap<T>& data,
151  aims::Connectivity::Type connectivity,
152  const T & backgrnd = 0, bool bin = true,
153  size_t minSize = 0, size_t maxSize = 0, size_t numMax = 0,
154  bool verbose = true );
155 
156  template <typename T>
157  void AimsConnectedComponent( AimsBucket<Void>& component,
158  const AimsData<T>& data,
159  aims::Connectivity::Type connectivity,
160  const T & backgrnd = 0, bool bin = true,
161  size_t minsize = 0, size_t maxSize = 0, size_t maxcomp = 0,
162  bool verbose = true );
163 
164  template <typename T>
165  void AimsConnectedComponent( AimsBucket<Void>& component,
166  const BucketMap<T>& data,
167  Connectivity::Type connectivity,
168  const T & backgrnd = 0, bool bin = true,
169  size_t minsize = 0, size_t maxSize = 0, size_t maxcomp = 0,
170  bool verbose = true );
171 
172  template <typename T>
173  AimsData<int16_t> AimsLabeledConnectedComponent( AimsBucket<Void>& component,
174  const AimsData<T>& data,
175  aims::Connectivity::Type connectivity,
176  const T & backgrnd = 0, bool bin = true,
177  size_t minsize = 0, size_t maxSize = 0, size_t maxcomp = 0,
178  bool verbose = true );
179 
180 }
181 
182 #endif
aims::Connectivity::Type
Type
The different kinds of connectivity.
Definition: connectivity.h:54
aims
The class for EcatSino data write operation.
Definition: border.h:44
verbose
int verbose
aims::BucketMap
An alternate, ordered, representation for buckets (voxels lists).
Definition: bucket.h:57
AimsBucket
The bucket base class to manage packages of points associated to their value during time...
Definition: bucket.h:48
aims::AimsConnectedComponent
void AimsConnectedComponent(AimsData< T > &data, aims::Connectivity::Type connectivity, std::map< T, size_t > &valids, const T &backgrnd=0, bool bin=true, size_t minSize=0, size_t maxSize=0, size_t numMax=0, bool verbose=true)
Definition: component.h:116
aims::AimsLabeledConnectedComponent
AimsData< int16_t > AimsLabeledConnectedComponent(AimsBucket< Void > &component, const AimsData< T > &data, aims::Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minsize=0, size_t maxSize=0, size_t maxcomp=0, bool verbose=true)
Definition: component_d.h:505
aimsdata_config.h