| ►Naims | The class for EcatSino data write operation |
| NDataManip | |
| ►Ndetail | |
| Ccyclic_iterator_base | TODO: when implementing the operator+=, it might be that we need to split the class in different parts according to TIterator::iterator_category – unless we can simply specialize the operator+= outside the class, and use enable_if! |
| ►Ninternal | |
| CAimsGraphReader_Private | |
| ►Nstrel | |
| CShape | Aims::strel::Shape pure abstract class representing a "shape" 3D structuring element |
| CShapeFactory | Aims::strel::Shape generator |
| CConnectivity | Aims::strel::Connectivity pure abstract class representing a "connectivity" 3D structuring element |
| CConnectivityFactory | Aims::strel::Connectivity generator |
| CClockWiseCircleXY | |
| CBorderFiller | This class contains static methods to fill the border of a VolumeRef with chosen values |
| ►CBorderIterator | Represents the border of a volume |
| Cconst_iterator | Border: const iterator |
| Citerator | Border: iterator |
| CBucketMap | An alternate, ordered, representation for buckets (voxels lists) |
| CCoordinatesLess | Helper class for ordering Coordinates by their z, y, x coordinates |
| CCoordinatesLess< T, 3 > | |
| CBucketUtil | Utility class related to buckets |
| CSparseVolume | |
| ►CSparseVolume< carto::Volume< T > > | |
| Cconst_iterator | |
| Cconst_LowLevelStorage | |
| Citerator | |
| CLowLevelStorage | |
| CSparseVolume< BucketMap< T > > | |
| CSparseVolume< BucketMap< Void > > | |
| ►CBucketMapGenerator | Factory class for various common shapes of meshes |
| CGenerator | |
| CColorMap | |
| CConnectivity | Topology of a data container |
| CConnectedComponentEngine | |
| CConnectedComponentEngine< carto::VolumeRef< T >, carto::VolumeRef< O > > | |
| CStructuringElement | Aims::StructuringElement class representing a 3D structuring element |
| CStructuredVolume | Class giving access to an iterator over the voxels of a volume inside of a structuring element |
| CStructuredConstVolume | |
| CStructuringElementRef | Convenient handle for a StructuringElement |
| CPolyline | |
| ►CPolylinePolynomialInterpolator | |
| CSampler | |
| CAimsFastAllocationData | |
| CHeader | |
| CPythonHeader | Attributed python-like header, stores all needed information about an object, currently used for volumes (AimsData) |
| CSliceFormatHeader | Header used for 2D image formats |
| CPath | |
| CSettings | |
| CScalarFeaturesProvider | This class should be inherited by all subclasses that provides scalar features |
| CScalarSetFeatures | |
| CPointSetFeatures | |
| CPointsInImageFeatures | |
| CRoiFeatures | |
| CBundle | |
| CBundles | |
| CFiberInfo | |
| CBundleInfo | |
| CBundleListener | Serial processing of bundles |
| CBundleProducer | Serial processing of bundles |
| CBundleWriter | Writes bundles information to a bundles file |
| CBundleReader | Reads a bundles file, and emits events while walking through its data |
| CBundleFormatReader | Virtual base class for bundles/fibers file formats support |
| CConnectomistBundlesReader | Connectomist .bundles format reader |
| CBundleToGraph | Bundles structure building as a Graph |
| CBundleToGraphWriter | |
| CBundleROISplit | |
| CBundleROISelect | |
| CBundleMotion | |
| CCurveSelection | |
| CCurveOrientation | |
| CBundlesFeatures | |
| CBundlesFusion | Bundles fusionning: can merge several bundles producers (files...) into a single output, merging bundles split accross several producers, but having the same name |
| CBundleRegroup | |
| CBundleSampler | Filter fibers by randomly discarding a proportion of them |
| CBundlesSlicerListener | |
| CBundlesSlicer | |
| CSimpleBundlesSlicer | |
| CBundleSlicesToMesh | |
| CFiberOversampler | |
| CMRTrixBundleReader | MRTrix .tck format reader |
| CTrackvisBundleReader | Trackvis .trk format reader |
| CAimsApplication | |
| CProcessInput | |
| CGraphElementCode | Describe how Aims objects are stored in graph objects |
| CGraphManip | Various manipulations on graphs |
| ►CAimsGraphReader | Reader / postprocessor for graph reading |
| CElementInfo | |
| CObjectWrapper | |
| CPostProcessor | |
| CWrapper | |
| ►CAimsGraphWriter | |
| CElementInfo | |
| CObjectWrapper | |
| CWrapper | |
| CAimsGraphWriter_Private | |
| CAPCReader | Reads .APC (anterior/posterior commissures) files |
| CArgHeader | Descriptor class for the .arg GRAPH file format header |
| CLowLevelArgReader | Wrapper for a specific GraphReader |
| CArgReader | |
| CLowLevelStandardArgReader | Wrapper for the standard GraphReader |
| CLowLevelArgWriter | Wrapper for a specific GraphWriter |
| CArgWriter | |
| CLowLevelStandardArgWriter | Wrapper for the standard GraphWriter |
| CBckFormat | |
| CBckMapFormat | |
| CVolumeFormat | |
| CVolumeRefFormat | |
| CMinfFormat | |
| CArgFormat | |
| CGraphVolumeFormat | |
| CHieFormat | |
| CMeshFormat | |
| CTriFormat | |
| CPovFormat | |
| CVrml1Format | |
| CMniObjFormat | |
| CWavefrontMeshFormat | |
| CImasFormat | |
| CImasSorDFormat | |
| CStxFormat | |
| CTexFormat | |
| CSpmFormat | |
| CGenesisFormat | |
| CImasVolFormat | |
| CSomaIOAimsDataFormat | |
| CBckHeader | Descriptor class for the .bck BUCKET file format header |
| CDefaultItemReader< AimsBucketItem< T > > | |
| CDefaultAsciiItemReader< AimsBucketItem< T > > | |
| CDefaultBSwapItemReader< AimsBucketItem< T > > | |
| CDefaultItemWriter< AimsBucketItem< T > > | |
| CDefaultAsciiItemWriter< AimsBucketItem< T > > | |
| CDefaultBSwapItemWriter< AimsBucketItem< T > > | |
| CBckReader | |
| CBckWriter | |
| CBckMapReader | BucketMap objects can be read / written by BckMapReader / BckMapWriter, these IO classes operate on the EXACT SAME FORMAT as the BCK format used by AimsBucket objects |
| CBckMapWriter | BucketMap objects can be read / written by BckMapReader / BckMapWriter, these IO classes operate on the EXACT SAME FORMAT as the BCK format used by AimsBucket objects |
| CChannelReader | Reads a carto::VolumeRef, with conversion if needed |
| CCoarseReader | Reads a AimsData<int16_t>, with conversion if needed |
| CDefaultItemReader | Default low-levels readers |
| CDefaultAsciiItemReader | |
| CDefaultBSwapItemReader | |
| CDefaultItemReader< AimsVector< T, D > > | Partial specialization for vectors |
| CDefaultBSwapItemReader< AimsVector< T, D > > | Partial specialization for vectors |
| CDefaultItemWriter | Default low-levels writers |
| CDefaultAsciiItemWriter | |
| CDefaultBSwapItemWriter | |
| CDefaultItemWriter< AimsVector< T, D > > | Partial specialization for vectors |
| CDefaultBSwapItemWriter< AimsVector< T, D > > | Partial specialization for vectors |
| CDefaultItemReader< DtiTensor > | |
| CDefaultAsciiItemReader< DtiTensor > | |
| CDefaultBSwapItemReader< DtiTensor > | |
| CDefaultItemWriter< DtiTensor > | |
| CDefaultAsciiItemWriter< DtiTensor > | |
| CDefaultBSwapItemWriter< DtiTensor > | |
| CFinder | Generic finder / checker for all data objects and file formats This will replace the old AimsFinder |
| CFinderSpmFormat | |
| CFinderGenesisFormat | |
| CFinderMeshFormat | |
| CFinderTriFormat | |
| CFinderMniObjFormat | |
| CFinderWavefrontFormat | |
| CFinderTexFormat | |
| CFinderBckFormat | |
| CFinderGraphFormat | |
| CFinderTrmFormat | |
| CFinderHieFormat | |
| CFinderImasFormat | |
| CFileFormat | Low-level object IO format: each specific format has such a reader / writer |
| CFinderFormat | Finder format checker |
| CFileFormatDictionary | Formats holder for each format of Aims object, used by Reader and Writer |
| CIOObjectTypesDictionary | |
| CGenesisHeader | GE Genesis format header |
| CGenesisReader | |
| CGraphBundlesFormat | |
| CHierarchyReader | |
| CImasHeader | |
| CIOOptions | |
| CItemReader | Low-level "small item" reader, used by higher-level file readers |
| CDefaultItemReader< std::vector< T > > | Partial specialization for vectors |
| CDefaultBSwapItemReader< std::vector< T > > | Partial specialization for vectors |
| CDefaultAsciiItemReader< std::vector< T > > | Partial specialization for vectors |
| CItemWriter | Low-level "small item" writer, used by higher-level file readers |
| CDefaultItemWriter< std::vector< T > > | Partial specialization for vectors |
| CDefaultBSwapItemWriter< std::vector< T > > | Partial specialization for vectors |
| CDefaultAsciiItemWriter< std::vector< T > > | Partial specialization for vectors |
| CLabelReader | |
| CDefaultItemReader< std::list< T > > | |
| CDefaultAsciiItemReader< std::list< T > > | |
| CDefaultBSwapItemReader< std::list< T > > | |
| CDefaultItemWriter< std::list< T > > | |
| CDefaultAsciiItemWriter< std::list< T > > | |
| CDefaultBSwapItemWriter< std::list< T > > | |
| CMniObjHeader | |
| CMotionWriter | The class for motion write operation |
| CPovWriter | POV (http://www.povray.org) format writer for mesh objects |
| CScaledEncoding | |
| CSelectionReader | |
| CSelectionWriter | |
| CSpmReader | The template class for SPM read operation |
| CSpmHeader | SPM Header class |
| CSpmWriter | The template class for SPM write operation |
| CDefaultItemReader< Trieder > | |
| CDefaultAsciiItemReader< Trieder > | |
| CDefaultBSwapItemReader< Trieder > | |
| CDefaultItemWriter< Trieder > | |
| CDefaultAsciiItemWriter< Trieder > | |
| CDefaultBSwapItemWriter< Trieder > | |
| CTrmHeader | Descriptor class for the .trm Motion file format header |
| CReader | Generic reader for every format of Aims object |
| CReaderAsObject | |
| CGenericWriter | |
| CWriter | Generic writer for every format of Aims object |
| CMeshHeader | |
| CMeshReader | Mesh format readers for mesh objects |
| CMeshWriter | Mesh format writer for mesh objects |
| CLowLevelRoiReader | |
| CDefaultItemReader< Tensor > | |
| CDefaultAsciiItemReader< Tensor > | |
| CDefaultBSwapItemReader< Tensor > | |
| CDefaultItemWriter< Tensor > | |
| CDefaultAsciiItemWriter< Tensor > | |
| CDefaultBSwapItemWriter< Tensor > | |
| CTriHeader | |
| CTriReader | Tri format readers for mesh objects |
| CTriWriter | |
| CTexHeader | |
| CTexReader | Tex format readers for texture objects |
| CTexWriter | Tex format readers for texture objects |
| CProcess | Link mechanism between the Finder and a process operating on arbitrary data types |
| CWavefrontHeader | |
| CWavefrontMeshWriter | |
| CWavefrontMeshWriter< D, Void > | |
| CWavefrontMeshReader | |
| CIntegrableOf | |
| CIntegratorOf | |
| CMathUtil | Defines basic math functions that run on iterators |
| CRombergIntegratorOf | |
| CTrapezeIntegratorOf | |
| CCutMesh | Cut meshes by a plane |
| CCutTexturedMesh | Textured variant of CutMesh |
| ►CSurfaceGenerator | Factory class for various common shapes of meshes |
| CGenerator | |
| CGenerator_wireframe | |
| CSurfaceManip | |
| CTex2Graph | |
| CMeshProjection | |
| CMeshProjectionFactory | |
| CDecomposedAffineTransformation3d | |
| CInterpolator | |
| CLinearInterpolator | |
| CQuaternion | |
| CStandardReferentials | |
| CHierarchy | |
| CspecifiedLabels | |
| CMaskIterator | |
| CMotionedMaskIterator | |
| CMaskIteratorOf | |
| CNodeFilter | |
| CLabelNodeFilter | |
| CNameNodeFilter | |
| CMaskIteratorOf< Graph > | |
| CMaskIteratorOf< carto::VolumeRef< T > > | |
| CROILabelMap | |
| CVolumeROILabelMap | |
| CMotionedVolumeROILabelMap | |
| CRoiIterator | |
| CMotionedRoiIterator | |
| CRoiIteratorOf | |
| CRoiIteratorOf< Graph > | |
| CRoiIteratorOf< carto::VolumeRef< T > > | |
| CAimsRoi | |
| ►CRoiDiff | Differences between two labelled graphs (sulci...) |
| CDiffStat | |
| CVoxelSampler | |
| CSimpleVoxelSampler | |
| CSelection | |
| CSelectionSet | |
| CSelector | |
| CSelectionExpander | |
| CCiftiTools | CIFTI-2 shaped matrices manipulation tools |
| CSparseMatrix | |
| CDefaultItemReader< SparseMatrix > | |
| CDefaultAsciiItemReader< SparseMatrix > | |
| CDefaultBSwapItemReader< SparseMatrix > | |
| CDefaultItemWriter< SparseMatrix > | |
| CDefaultAsciiItemWriter< SparseMatrix > | |
| CDefaultBSwapItemWriter< SparseMatrix > | |
| CSparseMatrixUtil | |
| ►CSparseOrDenseMatrix | |
| CMatrixLazyReader | MatrixLazyReader allows to read a row or a column from file, on demand |
| CAffineTransformation3d | Affine 3D transformation |
| CTransformationChain3d | Container for a composition of multiple transformations |
| CTransformationGraph3d | Manage transformations (affine and non-linear) transformations graph |
| CAnyTypeReaderProcess | A process to read an object of type T, even if the type on file is different |
| CAnyTypeReader | A class to read an object of type T, even if the type on file is different |
| CBoundingBox | |
| CClock | The basic time tool |
| Cconst_cyclic_iterator | A const cyclic iterator is a const iterator that goes back to the begining of the container when it reaches the end |
| Ccyclic_iterator | A cyclic iterator is an iterator that goes back to the begining of the container when it reaches the end |
| CProgressInfo | The template class used to display progression in text mode |
| CEcatFormat | |
| CEcatHeader | The descriptor class of the Ecat header |
| CEcatReader | The class for Ecat data read operation |
| CEcatSinoHeader | The descriptor class of the Ecat header |
| CEcatSinoReader | |
| CEcatSinoWriter | |
| CEcatWriter | The class for VIDA data write operation |
| CFinderEcatFormat | |
| CEcatPlugin | |
| CScannerConf | An attempt to efficiently manage view/sinogram acquisition PET data |
| CSinogram | |
| CFinderVidaFormat | |
| CVidaFormat | |
| CVidaHeader | The descriptor class of the VIDA header |
| CVidaReader | The class for VIDA data read operation |
| CVidaWriter | The class for VIDA data write operation |
| CVidaPlugin | |
| CPlyFormat | |
| CPlyHeader | |
| CPlyReader | |
| CPlyWriter | |
| CFinderPlyFormat | |
| CPlyPlugin | |
| CFdfFormat | |
| CFdfHeader | |
| CFdfReader | |
| CFinderFdfFormat | |
| CFdfParType | |
| CFdfProcPar | |
| CFdfPlugin | |
| CJpegFormat | |
| CJpegHeader | The descriptor class of the .dim GIS header |
| CJpegReader | |
| CJpegWriter | |
| CFinderJpegFormat | |
| CJpegPlugin | |
| CTiffFormat | |
| CTiffHeader | The descriptor class of the .dim GIS header |
| CTiffReader | |
| CTiffWriter | |
| CFinderTiffFormat | |
| CTiffPlugin | |
| CGiftiMeshFormat | |
| CGiftiTextureFormat | |
| CGiftiHeader | GIFTI Header class |
| CFinderGiftiFormat | |
| C_convertedNiftiValue | |
| C_convertedNiftiValue< AimsVector< U, D > > | |
| C_convertedNiftiArrayValue | |
| C_convertedNiftiArrayValue< AimsVector< U, D > > | |
| CGiftiPlugin | |
| ►Ncarto | |
| ►Ninternal | |
| CVolumePrinter | |
| CVolumePrinter< OUTP, true > | |
| CVolumePrinter< OUTP, false > | |
| NPaths | |
| Nvolumeutil | |
| Nwrap | |
| CDataTypeCode< AimsBucket< T > > | |
| CDataTypeCode< aims::BucketMap< T > > | |
| CDataTypeCode< AimsData< T > > | |
| CDivider< AimsVector< T, D >, U > | |
| CAimsDataInfo | |
| CSingleOption< aims::Reader< T > > | |
| CSingleOption< aims::Writer< T > > | |
| CDataTypeCode< AimsTimeSurface< D, T > > | |
| CDataTypeCode< AimsTimeSurface< 2, T > > | |
| CDataTypeCode< AimsTimeSurface< 4, T > > | |
| CDataTypeCode< TimeTexture< T > > | |
| CDataTypeCode< aims::SparseMatrix > | |
| CDataTypeCode< aims::SparseOrDenseMatrix > | |
| CDataTypeCode< aims::AffineTransformation3d > | |
| CRawConverter< aims::BucketMap< INP >, aims::BucketMap< OUTP > > | Partial specialization of Converter between buckets of different types |
| CRawConverter< aims::BucketMap< INP >, rc_ptr< Volume< OUTP > > > | Partial specialization of Converter between buckets and volumes |
| CRawConverter< aims::BucketMap< INP >, VolumeRef< OUTP > > | Partial specialization of Converter between buckets and volumes |
| CRawConverter< aims::BucketMap< Void >, rc_ptr< Volume< OUTP > > > | Partial specialization of Converter between void buckets and volumes |
| CRawConverter< aims::BucketMap< Void >, VolumeRef< OUTP > > | Partial specialization of Converter between void buckets and volumes |
| CRawConverter< rc_ptr< Volume< INP > >, aims::BucketMap< OUTP > > | Partial specialization of Converter between volumes and buckets |
| CRawConverter< VolumeRef< INP >, aims::BucketMap< OUTP > > | Partial specialization of Converter between volumes and buckets |
| CRawConverter< rc_ptr< Volume< INP > >, aims::BucketMap< Void > > | Partial specialization of Converter between volumes and void buckets |
| CRawConverter< VolumeRef< INP >, aims::BucketMap< Void > > | Partial specialization of Converter between volumes and void buckets |
| CConverterAllocator< aims::BucketMap< INP >, aims::BucketMap< OUTP > > | |
| CConverterAllocator< aims::BucketMap< INP >, rc_ptr< Volume< OUTP > > > | |
| CConverterAllocator< aims::BucketMap< INP >, VolumeRef< OUTP > > | |
| CRawConverter< INP, AimsHSV > | |
| CRawConverter< AimsHSV, OUTP > | |
| CRawConverter< AimsHSV, AimsRGB > | |
| CRawConverter< AimsHSV, AimsRGBA > | |
| CRawConverter< AimsRGB, AimsHSV > | |
| CRawConverter< AimsRGBA, AimsHSV > | |
| CRawConverter< INP, AimsRGB > | |
| CRawConverter< INP, AimsRGBA > | |
| CRawConverter< AimsRGB, OUTP > | |
| CRawConverter< AimsRGBA, OUTP > | |
| CRawConverter< AimsRGB, AimsRGBA > | |
| CRawConverter< AimsRGBA, AimsRGB > | |
| CRawConverter< AimsVector< T, D >, AimsRGB > | |
| CRawConverter< AimsRGB, AimsVector< T, D > > | |
| CRawConverter< AimsVector< T, D >, AimsRGBA > | |
| CRawConverter< AimsRGBA, AimsVector< T, D > > | |
| CRawConverter< TimeTexture< INP >, TimeTexture< OUTP > > | Partial specialization of Converter for different kind of textures |
| CRawConverter< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > > | |
| CRescaler< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > > | |
| CRawConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > > | |
| CShallowConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > > | |
| CConverterAllocator< carto::VolumeRef< INP >, carto::VolumeRef< OUTP > > | |
| CConverterAllocator< carto::VolumeRef< INP >, carto::VolumeRef< INP > > | |
| CConverterSwitch< carto::VolumeRef< INP >, carto::VolumeRef< INP >, false > | |
| CConverterSwitch< carto::VolumeRef< INP >, carto::VolumeRef< INP >, true > | |
| CSmartConverter< carto::VolumeRef< INP >, carto::VolumeRef< INP > > | |
| CRescaler< VolumeRef< AimsVector< T, D > >, VolumeRef< AimsRGB > > | |
| CRescaler< VolumeRef< AimsRGB >, VolumeRef< AimsVector< T, D > > > | |
| ►Ninternal | |
| Cthresh1 | |
| Cbetween_with_bounds | |
| Cbetween_with_upper_bound | |
| Cbetween_with_lower_bound | |
| Cbetween_without_bounds | |
| Coutside_with_bounds | |
| Coutside_with_upper_bound | |
| Coutside_with_lower_bound | |
| Coutside_without_bounds | |
| Cthresh2 | |
| Cclip1 | |
| Crel_between_with_bounds | |
| Crel_between_with_lower_bound | |
| Crel_between_with_upper_bound | |
| Crel_between_without_bounds | |
| Cclip2 | |
| Cthresh1_bin | |
| Cthresh2_bin | |
| ►Nsoma | |
| CTrmFormatChecker | .trm format for a transformation file |
| CTrmFormatWriter | |
| CTrm3DFormatWriter | |
| CTrmFormatReader | .trm format for a transformation file |
| CTrmT3DFormatReader | |
| CTrmGraphFormatChecker | Read transformation in a transformation graph (TransformationµGraph3d) |
| CTrmGraphFormatReader | Read transformation graph from a file (yaml, json or other) |
| CTrmGraphFormatWriter | Write transformation graph in files |
| CTrmInGraphFormatChecker | Read transformation in a transformation graph (TransformationGraph3d) |
| CTrmInGraphFormatReader | Read transformation in a transformation graph (TransformationGraph3d) |
| CTrmComposeFormatChecker | Read a transformation build from compising several transformation files |
| CTrmChainFormatChecker | Read a transformation build from compising several transformation files |
| CTrmComposeFormatReader | Read a transformation build from compising several transformation files |
| CTrmChainFormatReader | |
| CTrmHeaderFormatChecker | Read transformation in a file (nifti or other) file header |
| CTrmHeaderFormatReader | Read transformation in a file (nifti or other) file header |
| ►Nstd | STL namespace |
| Cnumeric_limits< carto::Volume< _Tp > > | |
| Cnumeric_limits< carto::VolumeRef< _Tp > > | |
1.9.1