aimsdata  5.1.2
Neuroimaging data handling
texR.h
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33 
34 /*
35  * Texture reader class
36  */
37 #ifndef AIMS_IO_TEXR_H
38 #define AIMS_IO_TEXR_H
39 
41 #include <aims/mesh/texture.h>
42 #include <aims/io/texheader.h>
43 #include <aims/io/defaultItemR.h>
45 #include <memory>
46 
47 
48 namespace aims
49 {
50 
57  template<class T> class AIMSDATA_API TexReader
58  {
59  public:
60  TexReader( const std::string & filename )
61  : _name( filename ), _itemr( 0 ) {}
63 
64  void read( TimeTexture<T> & thing, int frame = -1 );
66  { delete _itemr; _itemr = ir; }
67 
68  private:
69  std::string _name;
70  ItemReader<T> *_itemr;
71  };
72 
73 
74  template<class T> AIMSDATA_API
75  inline
77  {
78  r.read( thing );
79  return r;
80  }
81 
82 
83  template<class T>
84  inline
85  void TexReader<T>::read( TimeTexture<T> & thing, int frame )
86  {
87  if ( frame >= 0 )
88  std::cerr << "Warning : .tex single frame reading not implemented yet -\n"
89  << "reading whole texture" << std::endl;
90 
91  TexHeader hdr( _name );
92  size_t offset;
93 
94  hdr.read( &offset );
95 
96  std::ifstream is( hdr.filename().c_str(),
97  std::ios::in | std::ios::binary );
98  if ( !is )
100  is.unsetf( std::ios::skipws );
101  is.seekg( offset );
102  if ( !is )
104 
105  if ( !_itemr )
106  _itemr = new DefaultItemReader<T>;
107  ItemReader<T> *ir( _itemr->reader( hdr.openMode(), hdr.byteSwapping() ) );
109  std::unique_ptr<ItemReader<uint32_t> > sr( sr1.reader( hdr.openMode(), hdr.byteSwapping() ) );
110 
111  int nt;
112  hdr.getProperty( "nb_t_pos", nt );
113 
114  thing.setHeader( hdr );
115 
116  for ( int t=0; t<nt; ++t )
117  {
118  uint32_t time, nitem;
119  sr->read( is, time );
120  sr->read( is, nitem );
121  //cout << "time " << time << ", nitem : " << nitem << endl;
122  std::vector<T> & vec = thing[ time ].data();
123  vec.clear();
124  vec.insert( vec.end(), nitem, T() );
125  ir->read( is, &vec[0], nitem );
126  }
127 
128  delete ir;
129  }
130 
131 }
132 
133 
134 #endif
#define AIMSDATA_API
void setHeader(const aims::PythonHeader &hdr)
Set the header.
Definition: texture.h:147
Default low-levels readers.
Definition: defaultItemR.h:56
virtual ItemReader< T > * reader(const std::string &openmode="binar", bool bswap=false) const
Definition: defaultItemR.h:154
Low-level "small item" reader, used by higher-level file readers.
Definition: itemR.h:99
virtual void read(std::istream &is, T &item) const
Definition: itemR.h:103
virtual void read(size_t *offset=0)
virtual std::string filename() const
virtual std::string openMode() const
Definition: texheader.h:101
virtual bool byteSwapping() const
Tex format readers for texture objects.
Definition: texR.h:58
~TexReader()
Definition: texR.h:62
void read(TimeTexture< T > &thing, int frame=-1)
Definition: texR.h:85
TexReader(const std::string &filename)
Definition: texR.h:60
void setItemReader(ItemReader< T > *ir)
Definition: texR.h:65
virtual bool getProperty(const std::string &, Object &) const
static void launchErrnoExcept(const std::string &filename="")
int nt
The class for EcatSino data write operation.
Definition: borderfiller.h:13
GenesisReader< T > & operator>>(GenesisReader< T > &reader, AimsData< T > &thing)
Definition: genesisR.h:70