roi_diff.h

Go to the documentation of this file.

/* This software and supporting documentation are distributed by
 *     Institut Federatif de Recherche 49
 *     CEA/NeuroSpin, Batiment 145,
 *     91191 Gif-sur-Yvette cedex
 *     France
 *
 * This software is governed by the CeCILL-B license under
 * French law and abiding by the rules of distribution of free software.
 * You can  use, modify and/or redistribute the software under the
 * terms of the CeCILL-B license as circulated by CEA, CNRS
 * and INRIA at the following URL "http://www.cecill.info".
 *
 * As a counterpart to the access to the source code and  rights to copy,
 * modify and redistribute granted by the license, users are provided only
 * with a limited warranty  and the software's author,  the holder of the
 * economic rights,  and the successive licensors  have only  limited
 * liability.
 *
 * In this respect, the user's attention is drawn to the risks associated
 * with loading,  using,  modifying and/or developing or reproducing the
 * software by the user in light of its specific status of free software,
 * that may mean  that it is complicated to manipulate,  and  that  also
 * therefore means  that it is reserved for developers  and  experienced
 * professionals having in-depth computer knowledge. Users are therefore
 * encouraged to load and test the software's suitability as regards their
 * requirements in conditions enabling the security of their systems and/or
 * data to be ensured and,  more generally, to use and operate it in the
 * same conditions as regards security.
 *
 * The fact that you are presently reading this means that you have had
 * knowledge of the CeCILL-B license and that you accept its terms.
 */
 
 
#ifndef AIMS_ROI_ROI_DIFF_H
#define AIMS_ROI_ROI_DIFF_H
 
#include <graph/graph/graph.h>
#include <aims/bucket/bucket.h>
#include <cartodata/volume/volume.h>
 
namespace aims
{

  class RoiDiff
  {
  public:
    struct DiffStat
    {
      DiffStat()
        : matching_voxels( 0 ), unmatching_voxels( 0 ),
          //to_unknown( 0 ), from_unknown( 0 ),
          dice( 0. )
        {}

      unsigned matching_voxels;
      unsigned unmatching_voxels;
  //     unsigned to_unknown;
  //     unsigned from_unknown;
      double dice;
      BucketMap<Void> g2_bucket;
    };
 
    RoiDiff();
    ~RoiDiff();
 
    void diff( const Graph & g1, const Graph & g2 );
    void writeCSV( const std::string & name );
    void writeCSV( std::ostream & s );
 
    const std::map<std::string, DiffStat> & statsByLabel() const;
    const DiffStat & globalStats() const;
    carto::rc_ptr<BucketMap<Void> > mismatch_bucket() const;
    carto::rc_ptr<carto::Volume<int16_t> > graph2LabelVolume() const;
    const std::vector<std::string> & roiNames() const;
    const std::map<std::string, int> & roiNamesInv() const;
 
  private:
    struct Private;
    Private *d;
  };
 
}
 
#endif