Compute a spherical mesh of the cortical surface
This treatment yields a spherical mesh of the cortical surface for each hemisphere. This mesh corresponds to the grey/white interface. This mesh can be inflated for visualization purpose: (cf Ana Inflate Cortical Surface).
Side: Choice ( input )Left, Right or Both Hemispheres
mri_corrected: T1 MRI Bias Corrected ( input )
histo_analysis: Histo Analysis ( input )
left_grey_white: Left Grey White Mask ( input )classification (grey=100, white=200)
right_grey_white: Right Grey White Mask ( input )classification (grey=100, white=200)
left_hemi_cortex: Left CSF+GREY Mask ( output )
right_hemi_cortex: Right CSF+GREY Mask ( output )
left_white_mesh: Left Hemisphere White Mesh ( output )
right_white_mesh: Right Hemisphere White Mesh ( output )
fix_random_seed: Boolean ( input )
Toolbox : Morphologist
User level : 2
Identifier :
GreyWhiteSurface
Supported file formats :
mri_corrected :gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 imagehisto_analysis :Histo Analysis, Histo Analysisleft_grey_white :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imageright_grey_white :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imageleft_hemi_cortex :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imageright_hemi_cortex :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imageleft_white_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshright_white_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh