Create histo analysis manually

Create and edit histogram analysis

Description

Whenever the automatic histogram analysis process in Morphologist fails, this tool allows to manually create and set histogram and histogram analysis parameters.
The histo analysis file (.han) is created with default, arbitrary values, then the editor is run interactively. This editor can then save the edited values for grey and white matters peaks and standard deviations.
If the histogram itself (.his) has not been written, a new one is generated and saved by this process.

Parameters

mri_corrected: T1 MRI Bias Corrected ( input )

histo: Histogram ( output )

histo_analysis: Histo Analysis ( output )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : histo_analysis_creation

File name : brainvisa/toolboxes/morphologist/processes/editors/histo_analysis_creation.py

Supported file formats :

mri_corrected :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, Z compressed VIDA image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image, gz compressed VIDA image

histo :

Histogram, Histogram

histo_analysis :

Histo Analysis, Histo Analysis