brainvisa configuration modules

brainvisa.configuration.api

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

brainvisa.configuration.neuroConfig

Several global variables are defined in this module to store Brainvisa configuration and user options:

brainvisa.configuration.neuroConfig.logFileName

path of Brainvisa log file where the history of the current session will be saved.

brainvisa.configuration.neuroConfig.platform

linux, windows…

brainvisa.configuration.neuroConfig.gui

false if Brainvisa is in batch mode

brainvisa.configuration.neuroConfig.sessionID

brainvisa.configuration.neuroConfig.fullVersion

brainvisa.configuration.neuroConfig.shortVersion

Brainvisa version

brainvisa.configuration.neuroConfig.userProfile

if Brainvisa is started with -u option, the name of the profile stored in this variable is used to create a specific log file for this profile.

brainvisa.configuration.neuroConfig.siteOptionFile

path to a general options file that may be used for all users.

brainvisa.configuration.neuroConfig.userOptionFile

path to user options file.

brainvisa.configuration.neuroConfig.logFileName

path of Brainvisa log file where the history of the current session will be saved.

brainvisa.configuration.neuroConfig.runsInfo

information about the current executions of Brainvisa.

brainvisa.configuration.neuroConfig.temporaryDirectory

directory where temporary files will be written.

brainvisa.configuration.neuroConfig.mainPath

Path of Brainvisa main module.

brainvisa.configuration.neuroConfig.sharePath

Brainvisa share directory

brainvisa.configuration.neuroConfig.iconPath

brainvisa.configuration.neuroConfig.homeBrainVISADir

path to Brainvisa home directory (usually $HOME/.brainvisa)

brainvisa.configuration.neuroConfig.toolboxesDir

Brainvisa toolboxes directory

brainvisa.configuration.neuroConfig.processesPath

list of paths to Brainvisa processes (outside any toolbox)

brainvisa.configuration.neuroConfig.dataPath

list of DatabaseSettings objects indicating the selected databases.

brainvisa.configuration.neuroConfig.typesPath

list of paths to Brainvisa type files that contain the description of Brainvisa ontology.

brainvisa.configuration.neuroConfig.fileSystemOntologiesPath

list of paths to Brainvisa hierarchy files that contain the rules to organize Brainvisa databases directories.

brainvisa.configuration.neuroConfig.debugHierarchyScanning

stream where debug information about hierarchy rules may be written. Set with --debugHierarchy option.

brainvisa.configuration.neuroConfig.debugParameterLinks

stream where debug information about parameter links may be written. Set with –debugLinks option.

brainvisa.configuration.neuroConfig.sharedDatabaseFound

True if Brainvisa shared database which contain models, templates, referentials, etc, was found.

brainvisa.configuration.neuroConfig.mainDocPath

path to Brainvisa documentation directory

brainvisa.configuration.neuroConfig.docPath

path to Brainvisa documentation directory according to the choosen language.

brainvisa.configuration.neuroConfig.brainvisaSysEnv

soma.env.BrainvisaSystemEnv - defines system environment variables that have to be passed to external command to restore environment if it have been modified at brainvisa startup

brainvisa.configuration.neuroConfig.ignoreValidation

Do not check vor invalid processes, all are enabled. Set with --ignoreValidation.

brainvisa.configuration.neuroConfig.language

fr or en

brainvisa.configuration.neuroConfig.userLevel

the processes which level is greater than the user level are hidden. Basic = 0, advanced = 1, expert = 2.

brainvisa.configuration.neuroConfig.supportEmail

brainvisa.configuration.neuroConfig.SMTP_server_name

brainvisa.configuration.neuroConfig.textEditor

brainvisa.configuration.neuroConfig.HTMLBrowser

brainvisa.configuration.neuroConfig.fastStart

if this mode is enabled, brainvisa starts faster but with less features. Set with -f or -r options.

brainvisa.configuration.neuroConfig.noToolBox

if enabled, Brainvisa toolboxes are not loaded. Set with --noToolBox.

brainvisa.configuration.neuroConfig.setup

if enabled, the shared database is updated at startup. Set with --setup option.

brainvisa.configuration.neuroConfig.anatomistExecutable

brainvisa.configuration.neuroConfig.anatomistImplementation

brainvisa.configuration.neuroConfig.matlabRelease

brainvisa.configuration.neuroConfig.matlabExecutable

brainvisa.configuration.neuroConfig.matlabOptions

brainvisa.configuration.neuroConfig.matlabPath

brainvisa.configuration.neuroConfig.matlabStartup

brainvisa.configuration.neuroConfig.spmDirectory

brainvisa.configuration.neuroConfig.Roptions

brainvisa.configuration.neuroConfig.Rexecutable

brainvisa.configuration.neuroConfig.profileFileName

filename where profiling information may be written. Set with --profile option.

brainvisa.configuration.neuroConfig.historyBookDirectory

path to history_book directory, where processes executions and logs will be saved. Normally it is None so that it is stored in the database of each output data. But in some specific cases (distributed execution of single process) it can be useful to force it. May be a list of directories: in that case, history files are duplicated in each of them.

class brainvisa.configuration.neuroConfig.RunsInfo(dontrecordruns=False)

Bases: object

This class gets information about possibly existing runs of Brainvisa and adds information about the current one.

Variables:

• file (string) – information about current runs is stored in <Brainvisa home dir>/current_runs.minf

• currentRun (integer) – index of the current execution of Brainvisa (from 1)

• timeout (float) – timeout before asking the user if the execution of Brainvisa is still alive. When Brainvisa fails, the file current_runs.minf may not be cleaned.

• runs (dictionary) – information about current executions of Brainvisa. The information is loaded from the minf file and information about the current execution is added. It is a dictionary {index -> {host, pid, time, logFileName} }

• count (integer) – number of executions of Brainvisa

• expiredRuns (dictonary) – dictionary containing the runs for which the timeout is reached. The user will be asked if these runs are still alive. If not, the corresponding log files will be deleted and the current_runs.minf file will be cleaned.

check(context)

Checks if there are expired runs and asks the user what to do.

delete()

Removes current run information from the current_runs.minf file.

brainvisa.configuration.neuroConfig.chooseDatabaseVersionSyncOption(context)

Asks user to choose a database synchronization mode (Automatic or manual) when a database is used with different versions of Brainvisa. The choice is saved in brainvisa options file.

Parameters:

context – The context enables to adapt the interaction with the user according to Brainvisa mode of execution (graphical, batch)

Returns:

the user choice: auto for automatic mode, man for manual mode.

brainvisa.configuration.neuroConfig.environmentHTML()

Returns an HTML page displaying Brainvisa configuration:

• Brainvisa version

• Python Version

• Command line used to start Brainvisa

• Environment variables

• Brainvisa options (global variables of this module)

This page is displayed in Brainvisa log in starting Brainvisa item.

brainvisa.configuration.neuroConfig.findInPath(file, pathlist=['/casa/host/build/build_files/axon/../../bin', '/casa/host/src/development/casa-distro/5.1/cbin', '/casa/host/build/bin', '/casa/host/build/bin', '/casa/casa-distro/cbin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/casa/host/bootstrap/brainvisa-cmake/bin', '/casa/bootstrap/brainvisa-cmake/bin'], is_dir=False)

Returns the directory containing file

brainvisa.configuration.neuroConfig.findPlatform()

Identify system platform, possible return values are :

• ‘windows’: Windows

• ‘linux’: Linux

• ‘sunos’: SunOS (Solaris)

• ‘darwin’: Darwin (MacOS X)

• ‘irix’: Irix

• None: unknown

brainvisa.configuration.neuroConfig.getDocFile(filename)

Search doc file in doc path and if not found, in english documentation path.

brainvisa.configuration.neuroConfig.getDocPath(path, project='')

Returns the path of the documentation directory of the given project.

brainvisa.configuration.neuroConfig.getSharePath()

Returns BrainVISA share directory path.

brainvisa.configuration.neuroConfig.initializeOntologyPaths()

Initializes the global variables typesPath and fileSystemOntologiesPath. This function is used when toolboxes are reloaded.

brainvisa.configuration.neuroConfig.openDebugFile(fileName)

Opens a file to put debug messages in. If ‘-’ is given, sys.stdout is returned. If ‘~’ is given, sys.stderr is returned. If this function is used several times with the same fileName, the same file object is retured.

brainvisa.configuration.neuroConfig.stdinLoop()

Reads Brainvisa commands on stdin and executes them.

brainvisa.configuration.neuroConfig.versionNumber()

Returns Brainvisa short version X.Y as a float number

brainvisa.configuration.neuroConfig.versionString()

Returns Brainvisa full version ‘X.Y.Z’

brainvisa.configuration.neuroConfig.versionText()

Returns the text ‘BrainVISA X.Y.Z’

brainvisa.configuration.axon_capsul_config_link

brainvisa.configuration.brainvisa_configuration

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.brainvisa_configuration.BrainVISAConfiguration

Bases: ConfigurationGroup

class SPMConfiguration(*args, **kwargs)

Bases: HasSignature

signature = Signature( 'SPM99_compatibility', Boolean(), dict( defaultValue=False, doc='If selected, Analyse (*.hdr + *.img) images loaded from BrainVISA, Anatomist and Aims will use an heuristic to guess the orientationin in SPM99 compatible way.'), 'radiological_orientation', Boolean(), dict( defaultValue=True, doc='If selected, SPM is supposed to use radiological orientation for images. Otherwise it is supposed to use neurological convention.'),  )

The default empty signature

class SupportConfiguration(*args, **kwargs)

Bases: HasSignature

signature = Signature( 'userEmail', Unicode(), dict( defaultValue='', doc='Your email address that will appear in the "From:" field of messages send to BrainVISA support team.'), 'supportEmail', Unicode(), dict( defaultValue='support@brainvisa.info', doc='Email address of BrainVISA support team.'), 'smtpServer', Unicode(), dict( defaultValue='', doc='Address of the server that will be used to send emails.'),  )

The default empty signature

signature = Signature( 'userLevel', Choice( ('Basic', 0), ('Advanced', 1), ('Expert', 2) ), dict( defaultValue=0, doc='User level is used to hide experimental processes (and in some rare cases hide experimental parameters).'), 'language', Choice( ('<system default>', None), ('english', 'en'), ('french', 'fr') ), dict( defaultValue='en', doc='Language of the graphical interface (it is necessary to restart BrainVISA to take the modification into account).'), 'processesPath', Sequence( FileName( directoryOnly=True ) ), dict( defaultValue=[], doc='List of directories containing BrainVISA processes.'), 'temporaryDirectory', FileName( directoryOnly=True ), dict( defaultValue='/tmp', doc='Directory where temporary files are stored. Name of temporary files produced by BrainVISA starts with <tt>"bv_"</tt>.'), 'textEditor', OpenedChoice( ('featherpad', 'featherpad'), ('gedit', 'gedit'), ('kwrite', 'kwrite'), ('emacs', 'emacs'), ('kate', 'kate') ), dict( defaultValue='featherpad', doc='Location of the program used to edit text files.'), 'htmlBrowser', OpenedChoice( ('<built-in>', '') ), dict( defaultValue='', doc='Location of the program used to display HTML files.'), 'csvViewer', OpenedChoice( ('<built-in>', '') ), dict( defaultValue='', doc='Location of the program used to display CSV files.'), 'pngViewer', OpenedChoice( ('<built-in>', ''), ('lximage-qt', 'lximage-qt') ), dict( defaultValue='lximage-qt', doc='Location of the program used to display PNG images.'), 'removeTemporary', Boolean(), dict( defaultValue=True, doc='unselect this option if you do not want temporary files and directories to be automatically deleted. This option is used for debugging. If unselected BrainVISA can leave a lot of files in temporary directory.'), 'showParamUserLevel', Boolean(), dict( defaultValue=False, doc='select this option if you want user levels shown along parameter names in the process window.'), 'SPM', ClassDataType( <class 'brainvisa.configuration.brainvisa_configuration.BrainVISAConfiguration.SPMConfiguration'> ), dict( defaultValue=<brainvisa.configuration.brainvisa_configuration.BrainVISAConfiguration.SPMConfiguration object>), 'support', ClassDataType( <class 'brainvisa.configuration.brainvisa_configuration.BrainVISAConfiguration.SupportConfiguration'> ), dict( defaultValue=<brainvisa.configuration.brainvisa_configuration.BrainVISAConfiguration.SupportConfiguration object>), 'gui_style', OpenedChoice( ('<system default>', None) ), dict( defaultValue=None, doc='Style of the graphical interface.'), 'databasesWarning', Boolean(), dict( defaultValue=True, doc='Unselect this option to disable the warning message that is shown when you have not created any database.'), 'databaseVersionSync', Choice( ('Ask User', None), ('Automatic', 'auto'), ('Manual', 'man') ), dict( defaultValue=None, doc='Management of the database synchronization throught BrainVISA versions. Ask User : BrainVISA will ask what to do when a database need to be updated. Automatic : BrainVISA will automatically update your database if you switch from one BrainVISA version to another. Manual : If you modify a database and then switch from one BrainVISA version to another, you will have to update the database if you want BrainVISA take into account the modifications.'),  )

The default empty signature

brainvisa.configuration.brainvisa_configuration.defaultCSVViewer()

If a real CSV viewer is found, use it dy default. If there is no CSV viewer available, the built-in Qt viewer is used.

brainvisa.configuration.brainvisa_configuration.defaultHTMLBrowser()

If a real web browser is found, use it dy default. If there is no web browser available, the built-in Qt Browser is used but it cannot open websites.

brainvisa.configuration.brainvisa_configuration.defaultPNGViewer()

If a real PNG viewer is found, use it dy default. If there is no PNG viewer available, the built-in Qt viewer is used.

brainvisa.configuration.anatomist_configuration

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.anatomist_configuration.AnatomistConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'executable', Unicode(), dict( defaultValue='anatomist', doc='Location of Anatomist program.'),  )

The default empty signature

brainvisa.configuration.databases_configuration

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.databases_configuration.DatabaseSettings(directory=None, selected=True, read_only=False)

Bases: HasSignature

signature = Signature( 'directory', FileName( readOnly=True, directoryOnly=True ), 'read_only', Boolean(), 'expert_settings', ClassDataType( <class 'brainvisa.configuration.databases_configuration.ExpertDatabaseSettings'> ), dict( collapsed=True),  )

The default empty signature

class brainvisa.configuration.databases_configuration.DatabasesConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

class FileSystemOntology(directory='', selected=True, read_only=False)

Bases: HasSignature

signature = Signature( 'directory', FileName(), dict( defaultValue=''), 'selected', Boolean(), dict( defaultValue=True), 'read_only', Boolean(), dict( defaultValue=False),  )

The default empty signature

signature = Signature( 'fso', Sequence( ClassDataType( <class 'brainvisa.configuration.databases_configuration.DatabasesConfiguration.FileSystemOntology'> ) ), dict( defaultValue=[]),  )

The default empty signature

class brainvisa.configuration.databases_configuration.ExpertDatabaseSettings

Bases: HasSignature

signature = Signature( 'ontology', OpenedChoice( ('brainvisa-3.2.0', 'brainvisa-3.2.0'), ('brainvisa-3.1.0', 'brainvisa-3.1.0'), ('brainvisa-3.0', 'brainvisa-3.0'), ('shared', 'shared'), ('raw-bids-1.0', 'raw-bids-1.0'), ('spm', 'spm') ), dict( defaultValue='brainvisa-3.2.0'), 'sqliteFileName', FileName(), dict( defaultValue=''), 'activate_history', Boolean(), dict( defaultValue=False), 'fedji_backend', Boolean(), dict( defaultValue=False), 'uuid', Unicode(), dict( defaultValue='', visible=False), 'lastIncrementalUpdate', Unicode(), dict( defaultValue='', visible=False), 'lastIncrementalUpdates', Any(), dict( defaultValue={}, visible=False), 'preferred_formats_order', FormatsSequence( Unicode() ), dict( defaultValue=[], collapsed=True),  )

The default empty signature

class brainvisa.configuration.databases_configuration.FormatsSequence

Bases: Sequence

A L{Sequence} is a L{DataType} for Python sequence whose elements are all of the same type.

@type elementType: any value accepted by L{DataType.dataTypeInstance} @param elementType: type of all elements in the sequence @type minSize: positive integer @param minSize: minimum number of elements in the sequence (default = 0) @type maxSize: None or positive integer @param maxSize: maximum number of elements in the sequence. If value is C{None} (the default), there is no limit on the sequence size.

brainvisa.configuration.fsl_configuration

@organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.fsl_configuration.FSLConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'fsldir', FileName( directoryOnly=True ), dict( defaultValue='', doc='location of FSL installation directory'), 'fsl_commands_prefix', Unicode(), dict( defaultValue='', doc='prefix, prepended to FSL commands names, used in some installations (Ubuntu uses "fsl4.1-")'),  )

The default empty signature

brainvisa.configuration.matlab_configuration

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.matlab_configuration.MatlabConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'enable_matlab', Boolean(), dict( defaultValue=False, doc='if unchecked, matlab is disabled'), 'executable', Unicode(), dict( defaultValue='matlab', doc='location of the Matlab program'), 'version', Unicode(), dict( defaultValue='', doc='Matlab version'), 'options', Unicode(), dict( defaultValue='-nosplash -nodisplay', doc='Options passed to Matlab executable.'), 'path', Sequence( Unicode() ), dict( defaultValue=[], doc='List of directories that will be added to Matlab path.'), 'startup', Sequence( Unicode() ), dict( defaultValue=[], doc='List of Matlab commands to execute at startup.'),  )

The default empty signature

brainvisa.configuration.mpegConfig

brainvisa.configuration.spm_configuration

@organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.spm_configuration.SPMConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'spm12_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 12 installation directory'), 'spm12_standalone_command', FileName( readOnly=True ), dict( defaultValue='', doc='location of SPM 12 standalone (compiled) run script'), 'spm12_standalone_mcr_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 12 standalone MCR directory (generally ./spm12-standalone/mcr/v713'), 'spm12_standalone_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 12 standalone directory where the templates directory can be found.(Maybe ./spm12-standalone/spm12_mcr/spm12)'), 'spm8_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 8 installation directory'), 'spm8_standalone_command', FileName( readOnly=True ), dict( defaultValue='', doc='location of SPM 8 standalone (compiled) run script'), 'spm8_standalone_mcr_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 8 standalone MCR directory (generally &lt;spm8&gt;/standalone/mcr/v713'), 'spm8_standalone_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 8 standalone directory where the templates directory can be found.'), 'spm8_wfu_pickatlas_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM8 WFU PickAtlas directory where the atlases can be found.'), 'spm5_path', FileName( readOnly=True, directoryOnly=True ), dict( defaultValue='', doc='location of SPM 5 installation directory'),  )

The default empty signature

brainvisa.configuration.r_configuration

@author: Yann Cointepas @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.r_configuration.RConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'executable', Unicode(), dict( defaultValue='R', doc='Location of R program.'), 'options', Unicode(), dict( defaultValue='--vanilla --slave --args', doc='Options passed to R program.'),  )

The default empty signature

brainvisa.configuration.soma_workflow_configuration

class brainvisa.configuration.soma_workflow_configuration.SomaWorkflowConfiguration(*args, **kwargs)

Bases: ConfigurationGroup

signature = Signature( 'somaworkflow_keep_failed_workflows', Boolean(), dict( defaultValue=True, doc='Keep workflow in SWF database after running'), 'somaworkflow_keep_succeeded_workflows', Boolean(), dict( defaultValue=False, doc='Keep workflow in SWF database after running'),  )

The default empty signature

brainvisa.configuration.qt4gui

class brainvisa.configuration.qt4gui.neuroConfigGUI.BugReportDialog(parent=None, name=None)

Bases: QWidget

brainvisa.configuration.qt4gui.neuroConfigGUI.editConfiguration()

Opens Brainvisa options window. When the user closes the window, the configuration is saved in Brainvisa options file.

Some options are taken into account immediately:

• if databases selection has changed, databases are reloaded

• if userLevel has changed, the list of available processes is updated

• new HTML browser and new text editors are taken into account

• language change is applied to documentation pages.

Some other options are not applied directly but are saved in the options file and will be applied next time Brainvisa is started.

@author: Dominique Geffroy @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.qt4gui.databases_configuration_qt4gui.DatabaseManagerGUI(parent=None, name=None)

Bases: QWidget

update(self)

update(self, QRect) → None

update(self, QRegion) → None

DatabaseManagerGUI.update(self, int, int, int, int) -> None

class brainvisa.configuration.qt4gui.databases_configuration_qt4gui.DatabasesConfiguration_Qt4GUI(dataType)

Bases: Qt4GUI

Constructors of L{Qt4GUI} (and its derived classes) must accept a single C{dataType} parameter representing the type of data that can be view or edited by this GUI element. @param dataType: type data that this L{Qt4GUI} can handle. This can be any value accepted by L{DataType.dataTypeInstance}.

closeEditionWidget(editionWidget)

Close a widget (and free associated ressources) created by C{self.L{editionWidget}}.

editionWidget(object, parent=None, name=None, live=False)

Create a widget for editing an object.

setObject(editionWidget, object)

Modify C{object} to make it reflect the current state of C{editionWidget}. This method must be defined for mutable DataType. @see: L{getPythonValue}

updateEditionWidget(editionWidget, object)

Update C{editionWidget} to reflect the current state of C{object}. This method must be defined for both mutable and immutable DataType.

class brainvisa.configuration.qt4gui.databases_configuration_qt4gui.FormatsSequence_Qt4GUI(dataType)

Bases: Qt4GUI

Constructors of L{Qt4GUI} (and its derived classes) must accept a single C{dataType} parameter representing the type of data that can be view or edited by this GUI element. @param dataType: type data that this L{Qt4GUI} can handle. This can be any value accepted by L{DataType.dataTypeInstance}.

closeEditionWidget(editionWidget)

Close a widget (and free associated ressources) created by C{self.L{editionWidget}}.

editionWidget(object, parent=None, name=None, live=False)

Create a widget for editing an object.

setObject(editionWidget, object)

Modify C{object} to make it reflect the current state of C{editionWidget}. This method must be defined for mutable DataType. @see: L{getPythonValue}

updateEditionWidget(editionWidget, object)

Update C{editionWidget} to reflect the current state of C{object}. This method must be defined for both mutable and immutable DataType.

@author: Dominique Geffroy @organization: U{NeuroSpin<http://www.neurospin.org>} and U{IFR 49<http://www.ifr49.org>} @license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}

class brainvisa.configuration.qt4gui.matlab_configuration_qt4gui.MatlabConfiguration_Qt4GUI(instance)

Bases: Qt4GUI

This class adds a ‘guess configuration’ button to default GUI.

Constructors of L{Qt4GUI} (and its derived classes) must accept a single C{dataType} parameter representing the type of data that can be view or edited by this GUI element. @param dataType: type data that this L{Qt4GUI} can handle. This can be any value accepted by L{DataType.dataTypeInstance}.

closeEditionWidget(editionWidget)

Close a widget (and free associated ressources) created by C{self.L{editionWidget}}.

editionWidget(value, parent=None, name=None, live=False)

Create a widget for editing an object.

setObject(editionWidget, value)

Modify C{object} to make it reflect the current state of C{editionWidget}. This method must be defined for mutable DataType. @see: L{getPythonValue}

updateEditionWidget(editionWidget, value)

Update C{editionWidget} to reflect the current state of C{object}. This method must be defined for both mutable and immutable DataType.

class brainvisa.configuration.qt4gui.spm_configuration_qt4gui.SPMConfiguration_Qt4GUI(instance)

Bases: Qt4GUI

This class adds a ‘guess configuration’ button to default GUI.

Constructors of L{Qt4GUI} (and its derived classes) must accept a single C{dataType} parameter representing the type of data that can be view or edited by this GUI element. @param dataType: type data that this L{Qt4GUI} can handle. This can be any value accepted by L{DataType.dataTypeInstance}.

closeEditionWidget(editionWidget)

Close a widget (and free associated ressources) created by C{self.L{editionWidget}}.

editionWidget(value, parent=None, name=None, live=True)

Create a widget for editing an object.

setObject(editionWidget, value)

Modify C{object} to make it reflect the current state of C{editionWidget}. This method must be defined for mutable DataType. @see: L{getPythonValue}

updateEditionWidget(editionWidget, value)

Update C{editionWidget} to reflect the current state of C{object}. This method must be defined for both mutable and immutable DataType.