bio Namespace Reference

Namespaces
	Rescaler

Classes
class	BaseEdge
	Base class for edges. More...
class	BaseEdgeRef
	Reference counting pointer to a BaseEdge. More...
class	BaseGraph
	Base class for graphs. More...
class	BaseGraphRef
	Reference to a BaseGraph. More...
class	BaseMeasureVector
class	BaseVertex
	Base class for vertices. More...
class	BaseVertexRef
	Reference counting pointer to a BaseVertex. More...
class	BVclass
class	ChannelExtractor
class	ChannelExtractor< AimsHSV, C >
class	ChannelExtractor< AimsRGB, C >
class	ChannelExtractor< AimsRGBA, C >
class	ChannelImageProc
class	ColorExtractor
class	ConvertibleImageProc
class	ConvertibleImageProc< T, U, T >
class	CoustyFlowMap
	A flow map is a mapping of the vertices of a graph to a value. More...
class	CoustyFlowMap< PointVertexRef< Point4dl >, L >
	Flow map specialization for PointVertexRef<Point4dl> (as used by CoustyWatershed) More...
class	CoustyFlowMapRef
	Reference counting pointer to a CoustyFlowMap. More...
class	CoustyFlowMapRef< PointVertexRef< Point4dl >, L >
	Reference counting pointer to a CoustyFlowMap. More...
class	CoustyStream
	Streams represent a descent path in a graph. More...
class	CoustyStreamRef
	Reference counting pointer to a CoustyStream. More...
class	CoustyWatershed
	Watershed implementation as described in Cousty et al - Watershed cuts: minimum spanning forests and the drop of water principle (2007) The computation is done in linear time. More...
class	DpyBioParsers
class	DpyData
class	DpyFormat
class	DpyHeader
class	DpyParsers
class	DpyPlugin
class	DpyReader
class	DpyWriter
class	EWBaseGraph
	Base class for edge weighted graphs. More...
class	EWBaseGraphRef
	Reference to a EWBaseGraph. More...
class	ExtremaFinder
class	FinderDpyFormat
class	GaborExtractor
class	ImageProc
class	ImageProcessors
class	MorphoImageProc
class	NeighbourExtractor
class	ParsersInterface
class	PlaqueDescriptor
class	PointVertex
	Coordinates-defined vertices. More...
class	PointVertexRef
	Reference counting pointer to a PointVertex. More...
class	Rescaler
class	SetEdge
	Edges: set implementation of non-oriented edges. More...
class	SetEdgeRef
	Reference counting pointer to a SetEdge. More...
class	TextureExtractor
class	ValueVertex
	Vertices with value. More...
class	ValueVertexRef
	Reference counting pointer to a ValueVertex. More...
class	VolumeGraph
	Volume graphs are a graph implementation specifically designed to represent volumes as graphs (vertices are the voxels, and edges are a chosen connectivity). More...
class	VolumeGraphRef
	Reference to a VolumeGraph. More...
class	Watershed
	Interface to watershed implementations. More...

Typedefs
typedef carto::Array< BVclass >	BVclasses
typedef bio::BaseMeasureVector< double >	MeasureVector

Enumerations
enum	ImageProcessorMode

Functions
std::ostream &	operator<< (std::ostream &os, const bio::BVclass &thing)
BaseMeasureVector< T >	operator+ (const BaseMeasureVector< T > &aa, const BaseMeasureVector< T > &bb)
BaseMeasureVector< T >	operator- (const BaseMeasureVector< T > &aa, const BaseMeasureVector< T > &bb)
BaseMeasureVector< T >	operator* (const BaseMeasureVector< T > &aa, const T &bb)
BaseMeasureVector< T >	operator* (const T &aa, const BaseMeasureVector< T > &bb)
BaseMeasureVector< T >	operator/ (const BaseMeasureVector< T > &aa, const T &bb)
std::ostream &	operator<< (std::ostream &out, const bio::BaseMeasureVector< T > &aa)
carto::GenericObject *	plaquesHelper (carto::GenericObject *o, const std::string &n, carto::PythonReader &r)
void	plaquesHelper (const carto::GenericObject &obj, soma::PythonWriter &w, int ind, bool writeInternals)
std::string	timeString (std::string format="%d-%m-%Y %H:%M:%S")
DpyReader &	operator>> (DpyReader &reader, DpyData &thing)
DpyWriter &	operator<< (DpyWriter &writer, const DpyData &thing)

Variables
	Init
	OnDemand