algorithm.h

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/* Copyright (C) 2000-2013 CEA
 *
 * This software and supporting documentation were developed by
 *     bioPICSEL
 *     CEA/DSV/I²BM/MIRCen/LMN, Batiment 61,
 *     18, route du Panorama
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 *     France
 */

#ifndef BRAINRAT_MORPHOLOGY_ALGORITHM_H
#define BRAINRAT_MORPHOLOGY_ALGORITHM_H

#include <cartobase/smart/rcptr.h>
#include <aims/data/data_g.h>
#include <aims/roi/maskIterator.h>
#include <aims/connectivity/structuring_element.h>

// Get a structuring element of amplitude pixels
carto::rc_ptr<aims::StructuringElement> getSE(int se, double amplitude, bool planar, bool usecenter);

template <class T>
class morpho {
  private:
    morpho(){}
    
  public:
    virtual ~morpho(){}
    
    static double ApplySE(const AimsData<T> &image,
                          const Point3dl &p,
                          const aims::StructuringElement &sev,
                          const bool &notest = false);

    // Applies a structuring element of amplitude pixels on image.
    // Returns a double image
    static AimsData<double> ApplySE(const AimsData<T> &image,
                                    const aims::StructuringElement &sev,
                                    const bool &notest = false);

    // Applies a structuring element of amplitude pixels on image using a mask.
    // Returns a double image
    static AimsData<double> ApplySE(const AimsData<T> &image,
                                    carto::rc_ptr<aims::MaskIterator> maskiterator,
                                    const aims::StructuringElement &sev,
                                    const bool &notest = false);

    // Applies a structuring element of amplitude pixels on image.
    // Returns a double image
    static AimsData<double> ApplySE(const AimsData<T> &image, 
                                    int se, double amplitude,
                                    bool planar = true, bool usecenter = true,
                                    const bool &notest = false);

    // Applies a structuring element of amplitude pixels on image using a mask.
    // Returns a double image
    static AimsData<double> ApplySE(const AimsData<T> &image, 
                                    carto::rc_ptr<aims::MaskIterator> maskiterator, 
                                    int se, double amplitude,
                                    bool planar = true, bool usecenter = true,
                                    const bool &notest = false);
};

#endif