/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:57,041::INFO::process: '56' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:57,041::INFO::Writing module 'capsul' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:57,041::INFO::Index: an index has been written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul.
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... fait
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv'
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.AnaT1MRIViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.AnaWhiteMeshViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.PDFViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtDataEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.database_qc_table.DatabaseQcTable.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 74
mise à jour de l'environnement : 0 ajouté(s), 74 modifié(s), 0 supprimé(s)
lecture des sources... [ 1%] process_docs/morphologist/capsul/index
lecture des sources... [ 3%] process_docs/morphologist/capsul/pipeline/index
lecture des sources... [ 4%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
lecture des sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
lecture des sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation
lecture des sources... [ 8%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld
lecture des sources... [ 9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline
lecture des sources... [ 11%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization
lecture des sources... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped
lecture des sources... [ 14%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... lecture des sources... [ 15%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabelling.SulciLabelling
lecture des sources... [ 16%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM
lecture des sources... [ 18%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLNormalization
lecture des sources... [ 19%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline
fait
lecture des sources... [ 20%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.morphologist.Morphologist
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv ...
chargement de l'inventaire intersphinx 'morphouiusr' de doc/morphologist-ui-6.0/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory 'doc/morphologist-ui-6.0/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/doc/morphologist-ui-6.0/objects.inv'
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : changelog.md, index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.AnaWhiteMeshViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.PDFViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtDataEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.database_qc_table.DatabaseQcTable.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst, sulpated.rst
myst v4.0.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 74
mise à jour de l'environnement : 0 ajouté(s), 74 modifié(s), 0 supprimé(s)
lecture des sources... [ 1%] process_docs/morphologist/capsul/index
lecture des sources... [ 3%] process_docs/morphologist/capsul/pipeline/index
lecture des sources... [ 4%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist
lecture des sources... [ 22%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMNormalization
lecture des sources... [ 23%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline
lecture des sources... [ 24%] process_docs/morphologist/capsul/process/index
lecture des sources... [ 26%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.acpcorientation.AcpcOrientation
lecture des sources... [ 27%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter
lecture des sources... [ 28%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims
lecture des sources... [ 30%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainsegmentation.BrainSegmentation
lecture des sources... [ 31%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainvolumes.brainvolumes
lecture des sources... [ 32%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.corticalfoldsgraphthickness.CorticalFoldsGraphThickness
lecture des sources... [ 34%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.foldgraphupgradestructure.foldgraphupgradestructure
lecture des sources... [ 35%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims
lecture des sources... [ 36%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi
lecture des sources... [ 38%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh
lecture des sources... [ 39%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology
lecture des sources... [ 41%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.histoanalysis.HistoAnalysis
lecture des sources... [ 42%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.importt1mri.ImportT1MRI
lecture des sources... [ 43%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morpho_report.morpho_report
lecture des sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
lecture des sources... [ 45%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.morphologistprocess.morphologistProcess
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,271::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,271::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
lecture des sources... [ 7%] /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,272::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,272::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,272::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,272::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,272::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,273::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,274::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,275::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,275::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,276::INFO::process: '4' files written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,276::INFO::Writing module 'pattern_classification' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-29 05:50:58,276::INFO::Index: an index has been written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification.
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['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci', '--schema']
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WARNING: Failed to import deepsulci.pattern_classification.method.svm.
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* AttributeError: module 'deepsulci.pattern_classification.method' has no attribute 'svm'
* ModuleNotFoundError: No module named 'pcl'
pcl.registration missing !
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/importlib/__init__.py", line 126, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "<frozen importlib._bootstrap>", line 1206, in _gcd_import\n', ' File "<frozen importlib._bootstrap>", line 1178, in _find_and_load\n', ' File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked\n', ' File "<frozen importlib._bootstrap>", line 690, in _load_unlocked\n', ' File "<frozen importlib._bootstrap_external>", line 940, in exec_module\n', ' File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>\n import pcl\n', "ModuleNotFoundError: No module named 'pcl'\n"] [autodoc.import_object]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_labeling.patterndeeplabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:32: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst:47: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.resnet_training.patterndeeptraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:56: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst:84: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_labeling.patternsnipelabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:33: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst:53: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:11: WARNING: libellé dupliqué deepsulci.pattern_classification.capsul.snipe_training.patternsnipetraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:50: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst:74: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:11: WARNING: libellé dupliqué deepsulci.sulci_labeling.capsul.error_computation.errorcomputation, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:38: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst:55: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:11: WARNING: libellé dupliqué deepsulci.sulci_labeling.capsul.labeling.sulcideeplabeling, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:36: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst:69: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:11: WARNING: libellé dupliqué deepsulci.sulci_labeling.capsul.training.sulcideeptraining, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:60: WARNING: libellé dupliqué inputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst:88: WARNING: libellé dupliqué outputs, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst [autosectionlabel.process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining]
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Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/morpho-deepsulci-6.0/dev_doc/_static/documentation_options.js
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Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/morpho-deepsulci-6.0/dev_doc/_static/classic.css
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> Warning: Could not resolve keysym XF86MonBrightnessCycle
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Errors from xkbcomp are not fatal to the X server
Qt WebEngine seems to be initialized from a plugin. Please set Qt::AA_ShareOpenGLContexts using QCoreApplication::setAttribute before constructing QGuiApplication.
Attribute Qt::AA_ShareOpenGLContexts must be set before QCoreApplication is created.
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/runtime-a-sac-ns-brainvisa'
Starting Anatomist.....
config file : /home/a-sac-ns-brainvisa/.anatomist/config/settings.cfg
This plugin does not support propagateSizeHints()
Qt offscreen does not work.
Cannot allocate an OpenGL context. Using Xvfb if possible.
using DISPLAY=:1000
using DISPLAY=:1001
VirtualGL found.
VirtualGL is not working properly.
global modules: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/anatomist-6.0/python_plugins
home modules: /home/a-sac-ns-brainvisa/.anatomist/python_plugins
loading module statsplotwindow
loading module gltf_io
loading module valuesplotwindow
loading module anacontrolmenu
loading module ana_image_math
loading module histogram
loading module modelGraphs
loading module infowindow
loading module volumepalettes
loading module profilewindow
loading module simple_controls
loading module gradientpalette
loading module bundles_small_brains
loading module bsa_proba
loading module paletteViewer
loading module selection
loading module foldsplit
loading module bundles_split_by_cortical_regions
loading module meshsplit
loading module measure
loading module save_resampled
loading module palettecontrols
all python modules loaded
Anatomist started.
chargement des traductions [en]... fait
Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... La configuration a changé (3 options : 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', 'sphinx_gallery_conf')
fait
chargement de l'inventaire intersphinx 'soma' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : ana_notebook.ipynb, auto_examples/activateaction.rst, auto_examples/addMenuEntry.rst, auto_examples/aimsvolumetest.rst, auto_examples/anaevensimplerviewer.rst, auto_examples/anagraphannotate.rst, auto_examples/anatomistapiTests.rst, auto_examples/bvProcessSocket.rst, auto_examples/control.rst, auto_examples/customcommands.rst, ..., pyanatomist_headless.rst, pyanatomist_howto.rst, pyanatomist_notebook.rst, pyanatomist_pyaims_tutorial.rst, pyanatomist_socket.rst, pyanatomist_threaded.rst, pyanatomist_tutorial.rst, pyanatomist_tutorial_nb.ipynb, pyanatomist_wip.rst, sg_execution_times.rst
WARNING: Failed to import anatomist.altas_viewer.
Possible hints:
* AttributeError: module 'anatomist' has no attribute 'altas_viewer'
* ModuleNotFoundError: No module named 'anatomist.altas_viewer'
generating gallery...
generating gallery for auto_examples... [ 4%] volumetest.py
generating gallery for auto_examples... [ 9%] nomenclatureselection.py
generating gallery for auto_examples... [ 13%] graph.py
generating gallery for auto_examples... [ 17%] events.py
generating gallery for auto_examples... [ 22%] customcommands.py
generating gallery for auto_examples... [ 26%] addMenuEntry.py
generating gallery for auto_examples... [ 30%] fusion3D.py
generating gallery for auto_examples... [ 35%] selection.py
generating gallery for auto_examples... [ 39%] activateaction.py
generating gallery for auto_examples... [ 43%] graph_building.py
generating gallery for auto_examples... [ 48%] bvProcessSocket.py
generating gallery for auto_examples... [ 52%] aimsvolumetest.py
generating gallery for auto_examples... [ 57%] meshtest.py
generating gallery for auto_examples... [ 61%] sphere.py
generating gallery for auto_examples... [ 65%] fusion.py
generating gallery for auto_examples... [ 70%] ellipsoid.py
generating gallery for auto_examples... [ 74%] control.py
generating gallery for auto_examples... [ 78%] anagraphannotate.py
generating gallery for auto_examples... [ 83%] customopenglobject.py
generating gallery for auto_examples... [ 87%] volumeMeasures.py
generating gallery for auto_examples... [ 91%] anaevensimplerviewer.py
generating gallery for auto_examples... [ 96%] texturedrawing.py
generating gallery for auto_examples... [100%] anatomistapiTests.py
computation time summary:
- ../examples/activateaction.py: 0.00 sec 0.0 MB
- ../examples/addMenuEntry.py: 0.00 sec 0.0 MB
- ../examples/aimsvolumetest.py: 0.00 sec 0.0 MB
- ../examples/anaevensimplerviewer.py: 0.00 sec 0.0 MB
- ../examples/anagraphannotate.py: 0.00 sec 0.0 MB
- ../examples/anatomistapiTests.py: 0.00 sec 0.0 MB
- ../examples/bvProcessSocket.py: 0.00 sec 0.0 MB
- ../examples/control.py: 0.00 sec 0.0 MB
- ../examples/customcommands.py: 0.00 sec 0.0 MB
- ../examples/customopenglobject.py: 0.00 sec 0.0 MB
- ../examples/ellipsoid.py: 0.00 sec 0.0 MB
- ../examples/events.py: 0.00 sec 0.0 MB
- ../examples/fusion.py: 0.00 sec 0.0 MB
- ../examples/fusion3D.py: 0.00 sec 0.0 MB
- ../examples/graph.py: 0.00 sec 0.0 MB
- ../examples/graph_building.py: 0.00 sec 0.0 MB
- ../examples/meshtest.py: 0.00 sec 0.0 MB
- ../examples/nomenclatureselection.py: 0.00 sec 0.0 MB
- ../examples/selection.py: 0.00 sec 0.0 MB
- ../examples/sphere.py: 0.00 sec 0.0 MB
- ../examples/texturedrawing.py: 0.00 sec 0.0 MB
- ../examples/volumeMeasures.py: 0.00 sec 0.0 MB
- ../examples/volumetest.py: 0.00 sec 0.0 MB
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/nbsphinx-code-cells.css
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 0
mise à jour de l'environnement : 0 ajouté(s), 1 modifié(s), 0 supprimé(s)
lecture des sources... [100%] pyanatomist_addons
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/anatomist/cpp/followerobject.py:docstring of anatomist.cpp.followerobject:6: WARNING: Inline literal start-string without end-string. [docutils]
WARNING: autodoc: failed to import module 'altas_viewer' from module 'anatomist'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'anatomist.altas_viewer'\n"] [autodoc.import_object]
recherche des fichiers périmés... aucun résultat trouvé
Environnement de sérialisation... fait
vérification de la cohérence... /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_addons.rst: WARNING: Le document n'est inclus dans aucune toctree. [toc.not_included]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_base.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_base
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_cpp.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_cpp
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_direct.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_direct
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_headless.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_headless
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_howto.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_howto
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_notebook.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_notebook
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_pyaims_tutorial.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_pyaims_tutorial
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_socket.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_socket
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_threaded.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_threaded
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/anatomist-gpl/pyanatomist/doc/sphinx/pyanatomist_wip.rst: document référencé dans plusieurs arborescences : ['index', 'index'], sélectionnant : index <- pyanatomist_wip
fait
documents en préparation... fait
copie des ressources...
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Copie des fichiers téléchargeables... [ 99%] pyanatomist_tutorial_nb.ipynb
Copie des fichiers téléchargeables... [100%] ana_notebook.ipynb
Copie des fichiers statiques...
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/documentation_options.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/language_data.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/basic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/classic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/pyanatomist-6.0/sphinx/_static/sidebar.js
Copie des fichiers statiques: fait
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génération des index... genindex py-modindex fait
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Sphinx-Gallery successfully executed 0 out of 0 files subselected by:
gallery_conf["filename_pattern"] = '/(anagraphannotate)|(aimsvolumetest)|(anaevensimplerviewer)|(control)|(ellipsoid)|(fusion3D)|(graph)|(graph_building)|(meshtest)|(nomenclatureselection)|(selection)|(volumetest)\\.py'
gallery_conf["ignore_pattern"] = '__init__\\.py'
after excluding 12 files that had previously been run (based on MD5).
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embedding documentation hyperlinks for auto_examples... [ 52%] events.html
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embedding documentation hyperlinks for auto_examples... [ 64%] volumetest.html
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embedding documentation hyperlinks for auto_examples... [ 92%] anaevensimplerviewer.html
embedding documentation hyperlinks for auto_examples... [ 96%] anagraphannotate.html
embedding documentation hyperlinks for auto_examples... [100%] aimsvolumetest.html
La compilation a réussi, 5 avertissements.
Les pages HTML sont dans ../../../share/doc/pyanatomist-6.0/sphinx.
PyAnatomist Module present
PythonLauncher::runModules()
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/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/doc/source/tutorial/capsul_tutorial.ipynb:1724: ERROR: Duplicate substitution definition name: "xml pipeline". [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/doc/source/tutorial/capsul_tutorial.ipynb:1725: ERROR: Duplicate substitution definition name: "xml pipeline controller". [docutils]
recherche des fichiers périmés... aucun résultat trouvé
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vérification de la cohérence... fait
documents en préparation... fait
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Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/capsul-2.6/_static/documentation_options.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/capsul-2.6/_static/language_data.js
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/capsul-2.6/_static/basic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/capsul-2.6/_static/classic.css
Écriture du résultat du modèle évalué dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/doc/capsul-2.6/_static/sidebar.js
Copie des fichiers statiques: fait
copie des fichiers complémentaires...
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copie des ressources: fait
écriture... [ 50%] tutorial/capsul_tutorial
écriture... [100%] user_guide_tree/index
génération des index... genindex py-modindex fait
copying linked files...
copying notebooks ... [100%] tutorial/capsul_tutorial.ipynb
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Écriture des pages additionnelles... search fait
copie des images... [ 6%] tutorial/images/capsul_pipeline1.jpg
copie des images... [ 11%] tutorial/images/capsul_controller1.jpg
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Export de l'index de recherche en English (code: en)... fait
Export de l'inventaire des objets... fait
La compilation a réussi, 4 avertissements.
Les pages HTML sont dans ../../share/doc/capsul-2.6.
[100%] Built target capsul-sphinx
[100%] Create "share/doc/2.6"
[100%] Built target capsul-devdoc
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Generating BrainVISA processes documentation
[100%] Built target bv_ontology_doc
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[100%] Built target axon-doc
[100%] Built target doc
bv_maker summary:
OK step doc: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build, started: 2026/06/29 05:50, stopped: 2026/06/29 05:53
All went good.
Finished: SUCCESS
