/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:57,100::INFO::Found '56' process(es) in 'morphologist.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:57,100::INFO::Processing pipeline 'morphologist.capsul.axon.axonmorphologist.AxonMorphologist'...
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/home_local/a-sac-ns-brainvisa/tmp/runtime-a-sac-ns-brainvisa'
Starting Anatomist.....
config file : /home/a-sac-ns-brainvisa/.anatomist/config/settings.cfg
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
PyAnatomist Module present
PythonLauncher::runModules()
Multitexturing present
function glActiveTexture found.
function glClientActiveTexture found.
function glBlendEquation found.
function glTexImage3D found.
function glMultiTexCoord3f found.
function glBindFramebuffer found.
function glBindRenderbuffer found.
function glFramebufferTexture2D found.
function glGenFramebuffers found.
function glGenRenderbuffers found.
function glFramebufferRenderbuffer found.
function glRenderbufferStorage found.
function glCheckFramebufferStatus found.
function glDeleteRenderbuffers found.
function glDeleteFramebuffers found.
Number of texture units: 8
function glUniform1f found.
function glUniform1i found.
function glUniform4fv found.
function glGetUniformLocation found.
function glMultTransposeMatrixf found.
function glAttachShader found.
function glDetachShader found.
function glCompileShader found.
function glCreateProgram found.
function glCreateShader found.
function glDeleteProgram found.
function glDeleteShader found.
function glGetProgramiv found.
function glGetShaderiv found.
function glLinkProgram found.
function glShaderSource found.
function glUseProgram found.
GL_ARB_shadow present
GL_SGIX_shadow extension not available
GL_SGIX_depth_texture extension not available
GL_ARB_depth_texture extension present
GL_ARB_texture_cube_map extension present
GL_EXT_texture_cube_map extension present
Number of texture units: 8
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,461::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,466::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,512::INFO::Processing pipeline 'morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,519::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,525::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,558::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,601::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
This plugin does not support propagateSizeHints()
This plugin does not support raise()
This plugin does not support raise()
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,611::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
This plugin does not support propagateSizeHints()
This plugin does not support raise()
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,631::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,640::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,648::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,655::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,760::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,765::INFO::Processing pipeline 'morphologist.capsul.axon.brainorientation.BrainOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,812::INFO::Processing pipeline 'morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,818::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,825::INFO::Processing pipeline 'morphologist.capsul.axon.normalization.Normalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,857::INFO::Processing pipeline 'morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,900::INFO::Processing pipeline 'morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,909::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabelling.SulciLabelling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,929::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,939::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,946::INFO::Processing pipeline 'morphologist.capsul.fslnormalization.FSLnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,953::INFO::Processing pipeline 'morphologist.capsul.morphologist.Morphologist'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:50:59,991::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,002::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,011::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,011::INFO::pipeline: '15' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/pipeline.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,011::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,012::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,013::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,013::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,014::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,015::INFO::Processing pipeline 'morphologist.capsul.axon.corticalfoldsgraphthickness.CorticalFoldsGraphThickness'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,015::INFO::Processing pipeline 'morphologist.capsul.axon.foldgraphupgradestructure.foldgraphupgradestructure'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,016::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,016::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,017::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,017::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,018::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,018::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,019::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,020::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,024::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,024::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,025::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,025::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,026::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,026::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,027::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,027::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,028::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,029::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,029::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,030::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,030::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,031::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,031::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,032::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,033::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,033::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,034::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,034::INFO::Processing pipeline 'morphologist.capsul.axon.sulcivoronoi.sulcivoronoi'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,035::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,036::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,036::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,037::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,037::INFO::Processing pipeline 'morphologist.capsul.morpho_intersubject_status.MorphoInterSubjectStatus'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,038::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,042::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,043::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AWindowViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,043::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaBiasCorrectionViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,044::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaPialMeshViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,044::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaSulciViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,045::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaT1MRIViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,045::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaWhiteMeshViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,045::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisEditor'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,046::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,046::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.PDFViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,046::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.QtDataEditor'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,047::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.QtViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,047::INFO::Processing pipeline 'morphologist.capsul.qc.database_qc_table.DatabaseQcTable'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,048::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,048::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,049::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,049::INFO::process: '56' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,049::INFO::Writing module 'capsul' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,049::INFO::Index: an index has been written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist/capsul.
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,249::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_training.py", line 8, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,249::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_training
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,250::ERROR::Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/qt_apps/utils/find_pipelines.py", line 138, in find_pipeline_and_process
__import__(sub_sub_module_name)
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/capsul/svm_labeling.py", line 7, in <module>
from ..method.svm import SVMPatternClassification
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>
import pcl
ModuleNotFoundError: No module named 'pcl'
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,250::ERROR::Can't load module deepsulci.pattern_classification.capsul.svm_labeling
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,250::INFO::Found '0' pipeline(s) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,250::INFO::Found '4' process(es) in 'deepsulci.pattern_classification.capsul'.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,250::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,251::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,252::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,253::INFO::Processing pipeline 'deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,253::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,253::INFO::process: '4' files written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,253::INFO::Writing module 'pattern_classification' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,253::INFO::Index: an index has been written for module 'pattern_classification' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,298::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,309::INFO::Processing pipeline 'morphologist.capsul.spmnormalization.SPMnormalizationPipeline'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,318::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,318::INFO::pipeline: '15' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/pipeline.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,318::INFO::Processing pipeline 'morphologist.capsul.axon.acpcorientation.AcpcOrientation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,319::INFO::Processing pipeline 'morphologist.capsul.axon.aimsconverter.AimsConverter'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,320::INFO::Processing pipeline 'morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,320::INFO::Processing pipeline 'morphologist.capsul.axon.brainsegmentation.BrainSegmentation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,321::INFO::Processing pipeline 'morphologist.capsul.axon.brainvolumes.brainvolumes'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,322::INFO::Processing pipeline 'morphologist.capsul.axon.corticalfoldsgraphthickness.CorticalFoldsGraphThickness'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,323::INFO::Processing pipeline 'morphologist.capsul.axon.foldgraphupgradestructure.foldgraphupgradestructure'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,323::INFO::Processing pipeline 'morphologist.capsul.axon.fslnormalizationtoaims.FSLnormalizationToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,324::INFO::Processing pipeline 'morphologist.capsul.axon.greywhiteclassificationhemi.GreyWhiteClassificationHemi'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,324::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitemesh.GreyWhiteMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,324::INFO::Processing pipeline 'morphologist.capsul.axon.greywhitetopology.GreyWhiteTopology'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,325::INFO::Processing pipeline 'morphologist.capsul.axon.histoanalysis.HistoAnalysis'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,326::INFO::Processing pipeline 'morphologist.capsul.axon.importt1mri.ImportT1MRI'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,326::INFO::Processing pipeline 'morphologist.capsul.axon.morpho_report.morpho_report'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,327::INFO::Processing pipeline 'morphologist.capsul.axon.morphologistprocess.morphologistProcess'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,331::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_aimsmiregister.normalization_aimsmiregister'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,331::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_baladin.Normalization_Baladin'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,332::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_fsl_reinit.Normalization_FSL_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,332::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_spm_reinit.Normalization_SPM_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,333::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm12_reinit.normalization_t1_spm12_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,334::INFO::Processing pipeline 'morphologist.capsul.axon.normalization_t1_spm8_reinit.normalization_t1_spm8_reinit'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,334::INFO::Processing pipeline 'morphologist.capsul.axon.pialmesh.PialMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,335::INFO::Processing pipeline 'morphologist.capsul.axon.reorientanatomy.ReorientAnatomy'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,335::INFO::Processing pipeline 'morphologist.capsul.axon.scalpmesh.ScalpMesh'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,336::INFO::Processing pipeline 'morphologist.capsul.axon.skullstripping.skullstripping'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,336::INFO::Processing pipeline 'morphologist.capsul.axon.splitbrain.SplitBrain'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,337::INFO::Processing pipeline 'morphologist.capsul.axon.spmsn3dtoaims.SPMsn3dToAims'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,337::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraph.SulciGraph'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,338::INFO::Processing pipeline 'morphologist.capsul.axon.sulcigraphmorphometrybysubject.sulcigraphmorphometrybysubject'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,339::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingann.SulciLabellingANN'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,339::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamglobal.SulciLabellingSPAMGlobal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,340::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspamlocal.SulciLabellingSPAMLocal'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,340::INFO::Processing pipeline 'morphologist.capsul.axon.sulcilabellingspammarkov.SulciLabellingSPAMMarkov'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,341::INFO::Processing pipeline 'morphologist.capsul.axon.sulciskeleton.SulciSkeleton'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,342::INFO::Processing pipeline 'morphologist.capsul.axon.sulcivoronoi.sulcivoronoi'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,342::INFO::Processing pipeline 'morphologist.capsul.axon.t1biascorrection.T1BiasCorrection'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,343::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformation.TalairachTransformation'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,343::INFO::Processing pipeline 'morphologist.capsul.axon.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,344::INFO::Processing pipeline 'morphologist.capsul.import_t1_mri.ImportT1Mri'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,344::INFO::Processing pipeline 'morphologist.capsul.morpho_intersubject_status.MorphoInterSubjectStatus'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,345::INFO::Processing pipeline 'morphologist.capsul.morphologist_simple.MorphologistSimple'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,349::INFO::Processing pipeline 'morphologist.capsul.morphologist_viewer.MorphologistView'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,350::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AWindowViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,350::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaBiasCorrectionViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,351::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaPialMeshViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,351::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaSulciViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,352::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaT1MRIViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,352::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.AnaWhiteMeshViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,352::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisEditor'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,353::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,353::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.PDFViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,353::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.QtDataEditor'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,354::INFO::Processing pipeline 'morphologist.capsul.qc.ana_morpho_viewers.QtViewer'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,354::INFO::Processing pipeline 'morphologist.capsul.qc.database_qc_table.DatabaseQcTable'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,355::INFO::Processing pipeline 'morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,355::INFO::Processing pipeline 'morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,356::INFO::Writing index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,356::INFO::process: '56' files written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/process.
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,356::INFO::Writing module 'capsul' index at location '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul/index.rst'...
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/capsul/capsul/sphinxext/capsul_pipeline_rst.py::2026-06-06 05:51:00,356::INFO::Index: an index has been written for module 'capsul' at location /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist/capsul.
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/dev_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.sulci_labeling.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci', '--schema']
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'deepsulci.pattern_classification.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci', '--schema']
chargement des traductions [en]... fait
fait
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : index.rst, process_docs/morphologist/capsul/index.rst, process_docs/morphologist/capsul/pipeline/index.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization.rst, process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped.rst, ..., process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.AnaT1MRIViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.AnaWhiteMeshViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.HistoAnalysisViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.PDFViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtDataEditor.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.ana_morpho_viewers.QtViewer.rst, process_docs/morphologist/capsul/process/morphologist.capsul.qc.database_qc_table.DatabaseQcTable.rst, process_docs/morphologist/capsul/process/morphologist.capsul.sulci_manip.graph_pointcloud_label.GraphPointCloudLabel.rst, process_docs/morphologist/capsul/process/morphologist.capsul.talairachtransformationfromnormalization.TalairachTransformationFromNormalization.rst
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 74
mise à jour de l'environnement : 0 ajouté(s), 74 modifié(s), 0 supprimé(s)
lecture des sources... [ 1%] process_docs/morphologist/capsul/index
lecture des sources... [ 3%] process_docs/morphologist/capsul/pipeline/index
lecture des sources... [ 4%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.axonmorphologist.AxonMorphologist
WARNING: L’entrée '_static' de html_static_path n’existe pas
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... lecture des sources... [ 5%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.baladinnormalizationpipeline.BaladinNormalizationPipeline
generating CAPSUL processes docs...
['/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/bin/python3.11', '-m', 'capsul.sphinxext.capsul_pipeline_rst', '-i', 'morphologist.capsul', '-o', '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/process_docs/morphologist', '--schema']
chargement des traductions [en]... fait
lecture des sources... [ 7%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.brainorientation.BrainOrientation
fait
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv'
[autosummary] engendrement d’un auto-sommaire pour : api.rst, index.rst, process_docs/deepsulci/pattern_classification/index.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_labeling.PatternDeepLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.resnet_training.PatternDeepTraining.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_labeling.PatternSnipeLabeling.rst, process_docs/deepsulci/pattern_classification/process/deepsulci.pattern_classification.capsul.snipe_training.PatternSnipeTraining.rst, process_docs/deepsulci/pattern_classification/process/index.rst, process_docs/deepsulci/sulci_labeling/index.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.error_computation.ErrorComputation.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.labeling.SulciDeepLabeling.rst, process_docs/deepsulci/sulci_labeling/process/deepsulci.sulci_labeling.capsul.training.SulciDeepTraining.rst, process_docs/deepsulci/sulci_labeling/process/index.rst
lecture des sources... [ 8%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.corticalfoldsgraphupgradefromold.CorticalFoldsGraphUpgradeFromOld
lecture des sources... [ 9%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.fslnormalizationpipeline.FSLnormalizationPipeline
lecture des sources... [ 11%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalization.Normalization
lecture des sources... [ 12%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.normalizationskullstripped.NormalizationSkullStripped
lecture des sources... [ 14%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.spmnormalizationpipeline.SPMnormalizationPipeline
lecture des sources... [ 15%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabelling.SulciLabelling
lecture des sources... [ 16%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.axon.sulcilabellingspam.SulciLabellingSPAM
lecture des sources... [ 18%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLNormalization
lecture des sources... [ 19%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.fslnormalization.FSLnormalizationPipeline
lecture des sources... [ 20%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.morphologist.Morphologist
Notebook error!
Versions
========
* Platform: linux; (Linux-6.8.0-86-generic-x86_64-with-glibc2.39)
* Python version: 3.11.0 (CPython)
* Sphinx version: 8.2.3
* Docutils version: 0.21.2
* Jinja2 version: 3.1.6
* Pygments version: 2.19.2
Last Messages
=============
construction en cours [mo] : cibles périmées pour les fichiers po 0
écriture...
construction [html] : cibles périmées pour les fichiers sources 42
mise à jour de l'environnement :
[nouvelle configuration]
42 ajouté(s), 0 modifié(s), 0 supprimé(s)
lecture des sources... [ 2%]
ana_notebook
Loaded Extensions
=================
* sphinx.ext.mathjax (8.2.3)
* alabaster (1.0.0)
* sphinxcontrib.applehelp (2.0.0)
* sphinxcontrib.devhelp (2.0.0)
* sphinxcontrib.htmlhelp (2.1.0)
* sphinxcontrib.serializinghtml (1.1.10)
* sphinxcontrib.qthelp (2.0.0)
* sphinx.ext.autodoc.preserve_defaults (8.2.3)
* sphinx.ext.autodoc.type_comment (8.2.3)
* sphinx.ext.autodoc.typehints (8.2.3)
* sphinx.ext.autodoc (8.2.3)
* sphinx.ext.intersphinx (8.2.3)
* sphinx.ext.todo (8.2.3)
* sphinx.ext.coverage (8.2.3)
* sphinx.ext.ifconfig (8.2.3)
* sphinx.ext.viewcode (8.2.3)
* sphinx.ext.extlinks (8.2.3)
* sphinx.ext.graphviz (8.2.3)
* sphinx.ext.inheritance_diagram (8.2.3)
* sphinx.ext.autosummary (8.2.3)
* sphinx.ext.napoleon (8.2.3)
* sphinx_gallery.gen_gallery (0.20.0)
* nbsphinx (0.9.8)
Traceback
=========
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/nbsphinx/__init__.py", line 662, in parse
raise NotebookError(
nbsphinx.NotebookError: DeadKernelError in ana_notebook.ipynb:
Kernel died
La trace complète a été sauvegardée dans :
/home_local/a-sac-ns-brainvisa/tmp/sphinx-err-6730dvo4.log
Pour signaler cette erreur aux développeurs, veuillez ouvrir un ticket à l'adresse <https://github.com/sphinx-doc/sphinx/issues/>. Merci !
Merci de rapporter ceci s'il s'agit d'une erreur utilisateur, afin d'améliorer le message d'erreur à l'avenir.
PyAnatomist Module present
PythonLauncher::runModules()
Conversion de `source_suffix = '.rst'` en `source_suffix = {'.rst': 'restructuredtext'}`.
chargement de l'environnement pickled... lecture des sources... [ 22%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMNormalization
lecture des sources... [ 23%] process_docs/morphologist/capsul/pipeline/morphologist.capsul.spmnormalization.SPMnormalizationPipeline
lecture des sources... [ 24%] process_docs/morphologist/capsul/process/index
lecture des sources... [ 26%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.acpcorientation.AcpcOrientation
lecture des sources... [ 27%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.aimsconverter.AimsConverter
lecture des sources... [ 28%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.baladinnormalizationtoaims.BaladinNormalizationToAims
lecture des sources... [ 30%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainsegmentation.BrainSegmentation
fait
lecture des sources... [ 31%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.brainvolumes.brainvolumes
lecture des sources... [ 32%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.corticalfoldsgraphthickness.CorticalFoldsGraphThickness
chargement de l'inventaire intersphinx 'somabase' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-base-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyaims' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyaims-6.0/sphinx/objects.inv'
chargement de l'inventaire intersphinx 'pyana' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv ...
lecture des sources... [ 34%] process_docs/morphologist/capsul/process/morphologist.capsul.axon.foldgraphupgradestructure.foldgraphupgradestructure
chargement de l'inventaire intersphinx 'somaworkflow' de /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv ...
chargement de l'inventaire intersphinx 'morphouiusr' de doc/morphologist-ui-6.0/objects.inv ...
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/pyanatomist-6.0/sphinx/objects.inv'
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/share/doc/soma-workflow-6.0/sphinx/objects.inv'
WARNING: échec d'accès à un quelconque inventaire, messages de contexte suivants :
intersphinx inventory 'doc/morphologist-ui-6.0/objects.inv' not readable due to FileNotFoundError: [Errno 2] Aucun fichier ou dossier de ce nom: '/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morphologist-gpl/sphinx/user_doc/doc/morphologist-ui-6.0/objects.inv'
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WARNING: autodoc: failed to import module 'svm' from module 'deepsulci.pattern_classification.method'; the following exception was raised:
['Traceback (most recent call last):\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/.pixi/envs/default/lib/python3.11/importlib/__init__.py", line 126, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "<frozen importlib._bootstrap>", line 1206, in _gcd_import\n', ' File "<frozen importlib._bootstrap>", line 1178, in _find_and_load\n', ' File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked\n', ' File "<frozen importlib._bootstrap>", line 690, in _load_unlocked\n', ' File "<frozen importlib._bootstrap_external>", line 940, in exec_module\n', ' File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed\n', ' File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/lib/python3.11/site-packages/deepsulci/pattern_classification/method/svm.py", line 24, in <module>\n import pcl\n', "ModuleNotFoundError: No module named 'pcl'\n"] [autodoc.import_object]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:23: CRITICAL: Problems with "include" directive path:
InputError: [Errno 2] Aucun fichier ou dossier de ce nom: '../../../src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/pipeline/index.rst'. [docutils]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:21: WARNING: libellé dupliqué pipelines, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/pattern_classification/index.rst:26: WARNING: libellé dupliqué buildingblocks, l'autre instance se trouve dans /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/morpho-deepsulci/sphinx/process_docs/deepsulci/sulci_labeling/index.rst [autosectionlabel.process_docs/deepsulci/pattern_classification/index]
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make[2]: *** [CMakeFiles/Makefile2:11620: build_files/capsul/CMakeFiles/capsul-sphinx.dir/all] Complété
subprocess.TimeoutExpired: Command 'Command failed: 'make' '-j24' 'doc'
From directory: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build
('make', '-j24', 'doc')' timed out after 21599.99997595977 seconds
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
make[1]: *** [CMakeFiles/Makefile2:6583: CMakeFiles/doc.dir/rule] Complété
make: *** [Makefile:303: doc] Complété
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/brainvisa-cmake/python/brainvisa_cmake/commands.py", line 92, in process
logs = getattr(o, method)(*meth_args,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/brainvisa-cmake/python/brainvisa_cmake/build.py", line 755, in doc
system(cwd=self.directory, *
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/brainvisa-cmake/python/brainvisa_cmake/subprocess.py", line 57, in system
raise error[0](txt, *error[1].args[1:]) from error[1]
subprocess.TimeoutExpired: Command 'Command failed: 'make' '-j24' 'doc'
From directory: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build
('make', '-j24', 'doc')' timed out after 21599.99997595977 seconds
bv_maker summary:
FAILED step doc: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build, started: 2026/06/06 05:50, stopped: 2026/06/06 11:50
There were errors.
Traceback (most recent call last):
File "/home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/src/brainvisa-cmake/bin/bv_run_pixi_env.py", line 75, in <module>
subprocess.check_call(cmd, cwd=wd, env=env)
File "/usr/lib/python3.12/subprocess.py", line 413, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['pixi', 'run', '--frozen', 'bv_maker', 'doc']' returned non-zero exit status 1.
[IPKernelApp] WARNING | Parent appears to have exited, shutting down.
Finished: FAILURE
