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Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-0.0 -- sources
----------------------------------------


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/aims-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/aims-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/anatomist-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/anatomist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/axon
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/bioprocessing
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainrat-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainrat-private
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-share
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa-spm
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/brainvisa_freesurfer
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/capsul
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/constellation-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/constellation-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/cortical_surface-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/cortical_surface-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/disco
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/highres-cortex
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morpho-deepsulci
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-baby
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/morphologist-ui
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/nuclear_imaging-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/nuclear_imaging-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/populse-db
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/primatologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-base
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-io
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/soma-workflow
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src/sulci-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.

Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src
========================================================================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │                 ┌ update status
││││ │                 │ ┌ bv_maker upstream state
││││ │                 │ │  ┌ Git upstream state
││││ │                 │ │  │┌ Directory
     master (48dcfde9) ✓ U=  aims-free
     master (bd28573)  ✓ U=  aims-gpl
     master (63c01ac1) ✓ U=  anatomist-free
     master (055a588)  ✓ U=  anatomist-gpl
     master (5213d8cc) ✓ U=  axon
     master (88928c8)  ✓ U=  bioprocessing
     master (cd02b40)  ✓ U=  brainrat-gpl
     master (f552333)  ✓ U=  brainrat-private
     master (8a4e923)  ✓ U=  brainvisa-cmake
     master (8a4e923)  ✓ U=  brainvisa-cmake
     master (6197763)  ✓ U=  brainvisa-share
     master (d2087b5)  ✓ U=  brainvisa-spm
     master (1574c5b)  ✓ U=  brainvisa_freesurfer
     master (98232acb) ✓ U=  capsul
     master (110934b)  ✓ U=  constellation-gpl
     master (77484c7)  ✓ U=  constellation-nonfree
     master (50af02f)  ✓ U=  cortical_surface-gpl
     master (f607afc)  ✓ U=  cortical_surface-nonfree
     master (3d2a8d0)  ✓ U=  disco
     master (1bb4c84)  ✓ U=  highres-cortex
     master (87673b9)  ✓ U=  morpho-deepsulci
     master (5dcfbd3)  ✓ U=  morphologist-baby
     master (165db36d) ✓ U=  morphologist-gpl
     master (12c73e8)  ✓ U=  morphologist-nonfree
     master (1a2e186)  ✓ U=  morphologist-ui
   % master (b4a92468) ✓ U=  nuclear_imaging-gpl
     master (58e343b)  ✓ U=  nuclear_imaging-nonfree
     master (349e58b)  ✓ U=  populse-db
     master (fe19b9a)  ✓ U=  primatologist-gpl
     master (5ae5773)  ✓ U=  soma-base
     master (82984b4)  ✓ U=  soma-io
     master (fb22b4e)  ✓ U=  soma-workflow
     master (3a75327)  ✓ U=  sulci-nonfree

bv_maker summary:
OK          step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.0/src, started: 2026/06/29 05:01, stopped: 2026/06/29 05:01
All went good.

Finished: SUCCESS