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Started
Running as brainvisa
----------------------------------------
$ /usr/bin/python3 /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake/bin/bv_run_pixi_env.py bv_maker name=soma-env-0.1 -- sources
----------------------------------------
 WARN Encountered 1 warning while parsing the manifest:
  ⚠ The `project` field is deprecated. Use `workspace` instead.
   ╭─[/home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/pixi.toml:1:1]
 1 │ ╭─▶ [project]
 2 │ │   name = "soma-env-0.1"
 3 │ │   channels = ["pytorch", "nvidia", "conda-forge", "https://brainvisa.info/neuro-forge"]
 4 │ │   platforms = ["linux-64"]
 5 │ ├─▶ version = "0.1"
   · ╰──── replace this with 'workspace'
 6 │     
   ╰────



Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/aims-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-free
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis https://github.com/brainvisa/anatomist-free
   6af33c37..42698a68  WIP_Jordan -> origin/WIP_Jordan
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/anatomist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/axon
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/bioprocessing
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainrat-private
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-cmake
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-share
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa-spm
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/brainvisa_freesurfer
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/capsul
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/3.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/constellation-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/cortical_surface-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/disco
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/highres-cortex
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morpho-deepsulci
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-baby
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/morphologist-ui
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/capsul3
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/nuclear_imaging-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/populse-db
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
Depuis https://github.com/populse/populse_db
 - [supprimé]        (aucun(e)) -> origin/pre-commit-ci-update-config
   3c1d03e..b894335  master     -> origin/master
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git pull --ff-only
Déjà à jour.
$ git merge --ff-only refs/bv_head
Mise à jour 3c1d03e..b894335
Fast-forward
 .pre-commit-config.yaml             | 2 +-
 python/populse_db/test/test_base.py | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/primatologist-gpl
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-base
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/6.0
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/soma-io
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.


Updating git repository /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src/sulci-nonfree
$ git fetch --tags --prune origin '+refs/heads/*:refs/remotes/origin/*'
$ git update-ref --no-deref refs/bv_head refs/remotes/origin/master
$ git -c remote.origin.skipDefaultUpdate remote update
$ git merge --ff-only refs/bv_head
Déjà à jour.

Summary of Git repositories in /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src
========================================================================================
┌───── * uncommitted working tree changes
│┌──── + uncommitted index changes
││┌─── $ stash present
│││┌── % untracked files
││││ ┌ HEAD
││││ │                  ┌ update status
││││ │                  │ ┌ bv_maker upstream state
││││ │                  │ │  ┌ Git upstream state
││││ │                  │ │  │     ┌ Directory
     master (44f98bf3)  ✓ U=       aims-free
     master (f21dccc)   ✓ U=       aims-gpl
     master (31e1202b)  ✓ U=       anatomist-free
     capsul3 (c3ecb69)  ✓ U=       anatomist-gpl
     capsul3 (05237cd8) ✓ U=       axon
     master (cb8a653)   ✓ U=       bioprocessing
     master (a38f070)   ✓ U=       brainrat-gpl
     master (aaecedf)   ✓ U=       brainrat-private
     master (850b6f3)   ✓ U=       brainvisa-cmake
     master (850b6f3)   ✓ U=       brainvisa-cmake
     master (d810004)   ✓ U=       brainvisa-share
     master (50f4b51)   ✓ U=       brainvisa-spm
     master (b4a9fda)   ✓ U=       brainvisa_freesurfer
     3.0 (02318b38)     ✓ U=       capsul
     master (4b11ec2)   ✓ U=       constellation-gpl
     master (2cb7705)   ✓ U=       constellation-nonfree
     master (571abe4)   ✓ U=       cortical_surface-gpl
     master (9b0400d)   ✓ U=       cortical_surface-nonfree
     master (0d1f8b3)   ✓ U=       disco
     master (efaab07)   ✓ U=       highres-cortex
     capsul3 (b79781f)  ✓ U=       morpho-deepsulci
     master (facd37e)   ✓ U=       morphologist-baby
     capsul3 (f3800593) ✓ U=       morphologist-gpl
     master (220389f)   ✓ U=       morphologist-nonfree
     capsul3 (b101f44)  ✓ U=       morphologist-ui
     master (0337519e)  ✓ U=       nuclear_imaging-gpl
     master (fd0da1c)   ✓ U=       nuclear_imaging-nonfree
     3.0 (b894335)      ✓ U= u+121 populse-db
     master (fdd4bc1)   ✓ U=       primatologist-gpl
     6.0 (a4561c2)      ✓ U=       soma-base
     master (5157c30)   ✓ U=       soma-io
     master (96ef603)   ✓ U=       sulci-nonfree

bv_maker summary:
OK          step sources: /home_local/a-sac-ns-brainvisa/bbi-daily/soma-env-0.1/src, started: 2026/10/14 04:47, stopped: 2026/10/14 04:47
All went good.

Finished: SUCCESS