#include <cortical_surface/surfacereferential/sulcalLinesGeodesic.h>

Collaboration diagram for SulcalLinesGeodesic:

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Public Member Functions
	SulcalLinesGeodesic (string &adrMesh, string &adrCurv, string &adrGeodesicDepth, string &adrRootsLon, string &adrRootsLat, string &adrRootsBottom, string &adrLabelBasins, string &adrLabelSulcalines, string &adrSulcalines, int extremeties_method, int constraint_type, int strain, vector< float > proba, string saveFolder, float curv_thresh, string side, float clean_size, int constraintValue, int max_extremities)

	~SulcalLinesGeodesic ()

void	run ()

void	probaMap ()

void	writeShortTexture (string name, TimeTexture< short > &out)

void	writeFloatTexture (string name, TimeTexture< float > &out)

void	floodFillIter (int indexVertex, float newTextureValue, float oldTextureValue, TimeTexture< short > &texBasinsTemp, map< int, set< int > > &mapBasins)

TimeTexture< short >	texConnectedComponent (TimeTexture< short > &texBasins, map< int, set< int > > &mapBasins, int offset)

void	texBinarizeF2S (TimeTexture< float > &texIn, TimeTexture< short > &texOut, float threshold, int inf, int sup)

void	texBinarizeS2S (TimeTexture< short > &texIn, TimeTexture< short > &texOut, int threshold, int inf, int sup)

void	computeListLabelProjectionsBasins (TimeTexture< short > &roots, map< int, set< int > > &mapBasins, set< int > &listIndex, map< int, set< int > > &mapConstraint)

Public Attributes
string	_adrMesh

string	_adrRootsLat

string	_adrRootsLon

string	_adrCurv

string	_adrGeodesicDepth

string	_adrSaveFolder

string	_adrRootsBottom

string	_adrLabelBasins

string	_adrLabelSulcalines

string	_adrSulcalines

string	_side

int	_strain

int	_extremeties_method

int	_constraint_type

vector< float >	_proba

bool	_save

float	_curv_thresh

float	_clean_size

int	_constraintValue

int	_max_extremities

AimsSurfaceTriangle	_mesh

std::vector< std::set< uint > >	_neigh

TimeTexture< short >	_rootsLon

TimeTexture< short >	_rootsLat

TimeTexture< float >	_texCurv

TimeTexture< float >	_geoDepth

TimeTexture< float >	_geoDepthNorm

TimeTexture< float >	_geoCurvDepthNorm

Detailed Description

Definition at line 49 of file sulcalLinesGeodesic.h.

Constructor & Destructor Documentation

◆ SulcalLinesGeodesic()

SulcalLinesGeodesic::SulcalLinesGeodesic	(	string &	adrMesh,
		string &	adrCurv,
		string &	adrGeodesicDepth,
		string &	adrRootsLon,
		string &	adrRootsLat,
		string &	adrRootsBottom,
		string &	adrLabelBasins,
		string &	adrLabelSulcalines,
		string &	adrSulcalines,
		int	extremeties_method,
		int	constraint_type,
		int	strain,
		vector< float >	proba,
		string	saveFolder,
		float	curv_thresh,
		string	side,
		float	clean_size,
		int	constraintValue,
		int	max_extremities )

◆ ~SulcalLinesGeodesic()

SulcalLinesGeodesic::~SulcalLinesGeodesic ( )

Member Function Documentation

◆ computeListLabelProjectionsBasins()

void SulcalLinesGeodesic::computeListLabelProjectionsBasins	(	TimeTexture< short > &	roots,
		map< int, set< int > > &	mapBasins,
		set< int > &	listIndex,
		map< int, set< int > > &	mapConstraint )

◆ floodFillIter()

void SulcalLinesGeodesic::floodFillIter	(	int	indexVertex,
		float	newTextureValue,
		float	oldTextureValue,
		TimeTexture< short > &	texBasinsTemp,
		map< int, set< int > > &	mapBasins )

◆ probaMap()

void SulcalLinesGeodesic::probaMap ( )

◆ run()

void SulcalLinesGeodesic::run ( )

◆ texBinarizeF2S()

void SulcalLinesGeodesic::texBinarizeF2S	(	TimeTexture< float > &	texIn,
		TimeTexture< short > &	texOut,
		float	threshold,
		int	inf,
		int	sup )

◆ texBinarizeS2S()

void SulcalLinesGeodesic::texBinarizeS2S	(	TimeTexture< short > &	texIn,
		TimeTexture< short > &	texOut,
		int	threshold,
		int	inf,
		int	sup )

◆ texConnectedComponent()

TimeTexture< short > SulcalLinesGeodesic::texConnectedComponent	(	TimeTexture< short > &	texBasins,
		map< int, set< int > > &	mapBasins,
		int	offset )

◆ writeFloatTexture()

void SulcalLinesGeodesic::writeFloatTexture	(	string	name,
		TimeTexture< float > &	out )

◆ writeShortTexture()

void SulcalLinesGeodesic::writeShortTexture	(	string	name,
		TimeTexture< short > &	out )

Member Data Documentation

◆ _adrCurv

string SulcalLinesGeodesic::_adrCurv

Definition at line 57 of file sulcalLinesGeodesic.h.

◆ _adrGeodesicDepth

string SulcalLinesGeodesic::_adrGeodesicDepth

Definition at line 58 of file sulcalLinesGeodesic.h.

◆ _adrLabelBasins

string SulcalLinesGeodesic::_adrLabelBasins

Definition at line 61 of file sulcalLinesGeodesic.h.

◆ _adrLabelSulcalines

string SulcalLinesGeodesic::_adrLabelSulcalines

Definition at line 62 of file sulcalLinesGeodesic.h.

◆ _adrMesh

string SulcalLinesGeodesic::_adrMesh

Definition at line 54 of file sulcalLinesGeodesic.h.

◆ _adrRootsBottom

string SulcalLinesGeodesic::_adrRootsBottom

Definition at line 60 of file sulcalLinesGeodesic.h.

◆ _adrRootsLat

string SulcalLinesGeodesic::_adrRootsLat

Definition at line 55 of file sulcalLinesGeodesic.h.

◆ _adrRootsLon

string SulcalLinesGeodesic::_adrRootsLon

Definition at line 56 of file sulcalLinesGeodesic.h.

◆ _adrSaveFolder

string SulcalLinesGeodesic::_adrSaveFolder

Definition at line 59 of file sulcalLinesGeodesic.h.

◆ _adrSulcalines

string SulcalLinesGeodesic::_adrSulcalines

Definition at line 63 of file sulcalLinesGeodesic.h.

◆ _clean_size

float SulcalLinesGeodesic::_clean_size

Definition at line 72 of file sulcalLinesGeodesic.h.

◆ _constraint_type

int SulcalLinesGeodesic::_constraint_type

Definition at line 68 of file sulcalLinesGeodesic.h.

◆ _constraintValue

int SulcalLinesGeodesic::_constraintValue

Definition at line 73 of file sulcalLinesGeodesic.h.

◆ _curv_thresh

float SulcalLinesGeodesic::_curv_thresh

Definition at line 71 of file sulcalLinesGeodesic.h.

◆ _extremeties_method

int SulcalLinesGeodesic::_extremeties_method

Definition at line 67 of file sulcalLinesGeodesic.h.

◆ _geoCurvDepthNorm

TimeTexture<float> SulcalLinesGeodesic::_geoCurvDepthNorm

Definition at line 84 of file sulcalLinesGeodesic.h.

◆ _geoDepth

TimeTexture<float> SulcalLinesGeodesic::_geoDepth

Definition at line 82 of file sulcalLinesGeodesic.h.

◆ _geoDepthNorm

TimeTexture<float> SulcalLinesGeodesic::_geoDepthNorm

Definition at line 83 of file sulcalLinesGeodesic.h.

◆ _max_extremities

int SulcalLinesGeodesic::_max_extremities

Definition at line 74 of file sulcalLinesGeodesic.h.

◆ _mesh

AimsSurfaceTriangle SulcalLinesGeodesic::_mesh

Definition at line 76 of file sulcalLinesGeodesic.h.

◆ _neigh

std::vector<std::set<uint> > SulcalLinesGeodesic::_neigh

Definition at line 77 of file sulcalLinesGeodesic.h.

◆ _proba

vector<float> SulcalLinesGeodesic::_proba

Definition at line 69 of file sulcalLinesGeodesic.h.

◆ _rootsLat

TimeTexture<short> SulcalLinesGeodesic::_rootsLat

Definition at line 80 of file sulcalLinesGeodesic.h.

◆ _rootsLon

TimeTexture<short> SulcalLinesGeodesic::_rootsLon

Definition at line 79 of file sulcalLinesGeodesic.h.

◆ _save

bool SulcalLinesGeodesic::_save

Definition at line 70 of file sulcalLinesGeodesic.h.

◆ _side

string SulcalLinesGeodesic::_side

Definition at line 64 of file sulcalLinesGeodesic.h.

◆ _strain

int SulcalLinesGeodesic::_strain

Definition at line 66 of file sulcalLinesGeodesic.h.

◆ _texCurv

TimeTexture<float> SulcalLinesGeodesic::_texCurv

Definition at line 81 of file sulcalLinesGeodesic.h.

The documentation for this class was generated from the following file:

cortical_surface/surfacereferential/sulcalLinesGeodesic.h

Public Member Functions

Public Attributes