AimsPCA Class Reference

#include <aims/math/pca.h>

Collaboration diagram for AimsPCA:

Public Member Functions
	AimsPCA (int significantNumberOfVp, bool normalize=false, bool center=true)
	~AimsPCA ()
template<class T >
void	doIt (const carto::rc_ptr< carto::Volume< T > > &individuals)
template<class T >
void	doIt (const std::list< Point3d > &selectedPoints, const carto::rc_ptr< carto::Volume< T > > &data)
float	noiseVariance (float &meanNorm)
double	totalVariance (float &meanNorm) const
float	relativeUnreconstructedVariance (float &meanNorm)
void	setSignificantNumberOfVp (int significantNumberOfVp)
void	setMinimalInertia (float inertiaLimit)
float	minimalInertia () const
float	significantNumberOfVp () const
float	significantInertia ()
float	noiseInertia ()
float	unreconstructedVariance ()
float	relativeUnreconstructedVariance ()
carto::VolumeRef< float >	projection (const carto::rc_ptr< carto::Volume< float > > &individual)
float	reconstructionError2 (const carto::rc_ptr< carto::Volume< float > > &individual)
const carto::VolumeRef< float > &	projectionMatrix ()
const carto::VolumeRef< float > &	reconstructionErrorMatrix ()
const std::vector< float > &	eigenValues () const
const carto::VolumeRef< float > &	eigenVectors () const
carto::VolumeRef< float >	selectedEigenVectors () const
const std::vector< float > &	mean () const
const std::vector< float > &	var () const
bool	valid () const

Protected Member Functions
void	computeErrorAndProjMatrices ()

Protected Attributes
bool	_validPca
bool	_computed
bool	_matricesComputed
bool	_center
bool	_normalize
std::vector< float >	_mean
std::vector< float >	_var
std::vector< float >	_projectionVector
carto::VolumeRef< float >	_projectionMatrix
carto::VolumeRef< float >	_errorMatrix
std::vector< float >	_eigenValues
carto::VolumeRef< float >	_eigenVectors
carto::VolumeRef< float >	_selectedEigenVectors
carto::VolumeRef< float >	_selectedEigenVectorsTr
int	_significantNumberOfVp
float	_minimalInertia

Detailed Description

Definition at line 43 of file pca.h.

Constructor & Destructor Documentation

AimsPCA()

AimsPCA::AimsPCA	(	int	significantNumberOfVp,
		bool	normalize = false,
		bool	center = true
	)

~AimsPCA()

AimsPCA::~AimsPCA ( )

inline

Definition at line 47 of file pca.h.

Member Function Documentation

computeErrorAndProjMatrices()

void AimsPCA::computeErrorAndProjMatrices ( )

protected

doIt() [1/2]

template<typename T >

void AimsPCA::doIt

(

const carto::rc_ptr< carto::Volume< T > > &

individuals

)

Definition at line 60 of file pca_d.h.

References _center, _computed, _eigenValues, _eigenVectors, _matricesComputed, _mean, _normalize, _validPca, _var, carto::VolumeRef< class >::at(), AimsSVD< T >::doit(), carto::VolumeRef< class >::getSizeX(), carto::VolumeRef< class >::getSizeY(), AimsSVD< T >::setReturnType(), and AimsSVD< T >::sort().

Referenced by doIt().

doIt() [2/2]

template<typename T >

void AimsPCA::doIt	(	const std::list< Point3d > &	selectedPoints,
		const carto::rc_ptr< carto::Volume< T > > &	data
	)

Definition at line 41 of file pca_d.h.

References carto::VolumeRef< class >::at(), doIt(), and aims::meshdistance::max().

eigenValues()

const std::vector<float>& AimsPCA::eigenValues

(

)

const

eigenVectors()

const carto::VolumeRef<float>& AimsPCA::eigenVectors

(

)

const

mean()

const std::vector<float>& AimsPCA::mean

(

)

const

minimalInertia()

float AimsPCA::minimalInertia

(

)

const

noiseInertia()

float AimsPCA::noiseInertia

(

)

noiseVariance()

float AimsPCA::noiseVariance

(

float &

meanNorm

)

projection()

carto::VolumeRef<float> AimsPCA::projection

(

const carto::rc_ptr< carto::Volume< float > > &

individual

)

projectionMatrix()

const carto::VolumeRef<float>& AimsPCA::projectionMatrix

(

)

reconstructionError2()

float AimsPCA::reconstructionError2

(

const carto::rc_ptr< carto::Volume< float > > &

individual

)

reconstructionErrorMatrix()

const carto::VolumeRef<float>& AimsPCA::reconstructionErrorMatrix

(

)

relativeUnreconstructedVariance() [1/2]

float AimsPCA::relativeUnreconstructedVariance

(

)

relativeUnreconstructedVariance() [2/2]

float AimsPCA::relativeUnreconstructedVariance

(

float &

meanNorm

)

selectedEigenVectors()

carto::VolumeRef<float> AimsPCA::selectedEigenVectors

(

)

const

setMinimalInertia()

void AimsPCA::setMinimalInertia

(

float

inertiaLimit

)

setSignificantNumberOfVp()

void AimsPCA::setSignificantNumberOfVp

(

int

significantNumberOfVp

)

significantInertia()

float AimsPCA::significantInertia

(

)

significantNumberOfVp()

float AimsPCA::significantNumberOfVp

(

)

const

totalVariance()

double AimsPCA::totalVariance

(

float &

meanNorm

)

const

unreconstructedVariance()

float AimsPCA::unreconstructedVariance

(

)

valid()

bool AimsPCA::valid ( ) const

inline

Definition at line 85 of file pca.h.

References _validPca.

var()

const std::vector<float>& AimsPCA::var

(

)

const

Member Data Documentation

_center

bool AimsPCA::_center

protected

Definition at line 92 of file pca.h.

Referenced by doIt().

_computed

bool AimsPCA::_computed

protected

Definition at line 90 of file pca.h.

Referenced by doIt().

_eigenValues

std::vector<float> AimsPCA::_eigenValues

protected

Definition at line 100 of file pca.h.

Referenced by doIt().

_eigenVectors

carto::VolumeRef<float> AimsPCA::_eigenVectors

protected

Definition at line 101 of file pca.h.

Referenced by doIt().

_errorMatrix

carto::VolumeRef<float> AimsPCA::_errorMatrix

protected

Definition at line 99 of file pca.h.

_matricesComputed

bool AimsPCA::_matricesComputed

protected

Definition at line 91 of file pca.h.

Referenced by doIt().

_mean

std::vector<float> AimsPCA::_mean

protected

Definition at line 94 of file pca.h.

Referenced by doIt().

_minimalInertia

float AimsPCA::_minimalInertia

protected

Definition at line 106 of file pca.h.

_normalize

bool AimsPCA::_normalize

protected

Definition at line 93 of file pca.h.

Referenced by doIt().

_projectionMatrix

carto::VolumeRef<float> AimsPCA::_projectionMatrix

protected

Definition at line 98 of file pca.h.

_projectionVector

std::vector<float> AimsPCA::_projectionVector

protected

Definition at line 97 of file pca.h.

_selectedEigenVectors

carto::VolumeRef<float> AimsPCA::_selectedEigenVectors

protected

Definition at line 102 of file pca.h.

_selectedEigenVectorsTr

carto::VolumeRef<float> AimsPCA::_selectedEigenVectorsTr

protected

Definition at line 103 of file pca.h.

_significantNumberOfVp

int AimsPCA::_significantNumberOfVp

protected

Definition at line 105 of file pca.h.

_validPca

bool AimsPCA::_validPca

protected

Definition at line 89 of file pca.h.

Referenced by doIt(), and valid().

_var

std::vector<float> AimsPCA::_var

protected

Definition at line 95 of file pca.h.

Referenced by doIt().

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The documentation for this class was generated from the following files:

• aims/math/pca.h
• aims/math/pca_d.h