aimsalgo  5.1.2
Neuroimaging image processing
meshToVoxelsResampler.h
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33 
34 
35 #ifndef AIMS_RESAMPLING_MESHTOVOXELSRESAMPLER_H
36 #define AIMS_RESAMPLING_MESHTOVOXELSRESAMPLER_H
37 
39 #include <aims/vector/vector.h>
40 #include <aims/mesh/surface.h>
41 #include <cartobase/type/types.h>
42 #include <aims/bucket/bucket.h>
43 
44 namespace aims
45 {
46 
50 template<typename O>
52 {
53 public:
54 
56  virtual ~MeshToVoxelsResampler() {};
57 
58 public:
64  O doit(const AimsSurfaceTriangle &surface, float spacing=1.,
65  unsigned int connexity=26);
66 
67 private:
68  O init_data(const AimsVector<float,3> &offset, float spacing,
69  unsigned int dimx, unsigned int dimy, unsigned int dimz) const;
70  void set(O &output, uint x2, uint y2, uint z2, uint ind) const;
71  void fill_header(carto::PropertySet &hdr, O &output,
72  const AimsVector<float,3> & offset, float spacing) const;
73  void setVoxelSize( O & output, float vx, float vy, float vz,
74  float vt ) const;
75 };
76 
77 
78 template<> inline
80 MeshToVoxelsResampler<carto::rc_ptr<carto::Volume<unsigned int> > >::
81 init_data(const AimsVector<float,3> &offset, float spacing,
82  unsigned int dimx, unsigned int dimy, unsigned int dimz) const
83 {
84  carto::VolumeRef<unsigned int> ima(dimx, dimy, dimz);
85  ima = 0; //value of background
86  carto::PropertySet &hdr = ima.header();
87  fill_header( hdr, ima, offset, spacing );
88  return ima;
89 }
90 
91 template<> inline void MeshToVoxelsResampler<carto::rc_ptr<carto::Volume<unsigned int> > >::
92 set( carto::rc_ptr<carto::Volume<unsigned int> > &output, uint x2, uint y2,
93  uint z2, uint ind ) const
94 {
95  output->at(x2, y2, z2) = ind;
96 }
97 
98 template<> inline
99 aims::BucketMap<Void> MeshToVoxelsResampler<aims::BucketMap<Void> >::
100 init_data(const AimsVector<float,3> &offset, float spacing,
101  unsigned int, unsigned int, unsigned int) const
102 {
103  aims::BucketMap<Void> bucketmap;
104  MeshToVoxelsResampler<aims::BucketMap<Void> >::fill_header(
105  bucketmap.header().value<carto::PropertySet>(), bucketmap, offset,
106  spacing);
107 
108  return bucketmap;
109 }
110 
111 template<> inline
112 void MeshToVoxelsResampler<aims::BucketMap<Void> >::
113 set(aims::BucketMap<Void> &output, uint x2, uint y2, uint z2, uint) const
114 {
115  output.insert(Point3d(x2, y2, z2), Void());
116 }
117 
118 template<> inline
119 void
120 MeshToVoxelsResampler<carto::rc_ptr<carto::Volume<unsigned int> > >::
121 setVoxelSize( carto::rc_ptr<carto::Volume<unsigned int> > & output, float vx,
122  float vy, float vz, float vt) const
123 {
124  output->setVoxelSize( vx, vy, vz, vt );
125 }
126 
127 template<> inline
128 void
129 MeshToVoxelsResampler<aims::BucketMap<Void> >::
130 setVoxelSize( aims::BucketMap<Void> & output, float vx,
131  float vy, float vz, float vt) const
132 {
133  output.setSizeXYZT( vx, vy, vz, vt );
134 }
135 
136 }
137 
138 #endif
void insert(const Point3d &pos, const T &item)
void setSizeXYZT(float sizex, float sizey, float sizez, float sizet)
const aims::PythonHeader & header() const
void setVoxelSize(float sizex, float sizey, float sizez, float sizet)
3D rasterization (voxelization) of a mesh O : VolumeRef<unsigned int> or BucketMap<Void>
O doit(const AimsSurfaceTriangle &surface, float spacing=1., unsigned int connexity=26)
surface : input mesh spacing : voxel size (according to mesh metric) connexity : 6 or 26
const T & value() const
AIMSDATA_API AimsTimeSurface< 3, Void > AimsSurfaceTriangle
unsigned int uint