aimsalgo  5.1.2
Neuroimaging image processing
scaleSpaceBlob.h
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33 
34 #ifndef AIMS_PRIMALSKETCH_SCALESPACEBLOB_H
35 #define AIMS_PRIMALSKETCH_SCALESPACEBLOB_H
36 
37 #include <cstdlib>
40 #include <set>
41 #include <map>
42 #include <list>
43 #include <utility>
44 
45 namespace aims
46 {
48  {
49  APPEAR = 1,
53  COMPLEX
54  };
55 
56  template<class T> class ScaleSpaceBlob;
57  template<class T> class Bifurcation {
58 
59  protected:
60  char _type;
61  std::list<ScaleSpaceBlob<T>*> topBlobs; // scale(bottomBlobs) < scale(topBlobs)
62  std::list<ScaleSpaceBlob<T>*> bottomBlobs; // by convention
63  float _tUp;
64  float _tDown;
65  float _tMid;
66 
67  public:
68 
69  Bifurcation(char type, float tUp, float tDown) : _type(type), _tUp(tUp), _tDown (tDown){
70 
71  _tMid=exp((log(_tUp)+log(_tDown))/2.0);
72 
73  }
74  char Type() {return _type;}
75  float tUp() {return _tUp;}
76  float tDown() {return _tDown;}
77  float tMid() {return _tMid;}
78  void setType(char type){ _type = type; }
79  void settUp(float tUp){ _tUp = tUp; }
80  void settDown(float tDown){ _tDown = tDown; }
81  void settMid(float tMid){ _tMid = tMid; }
82 
83  void AddTopBlob(ScaleSpaceBlob<T> *blob) {topBlobs.push_back(blob);}
84  void AddBottomBlob(ScaleSpaceBlob<T> *blob) {bottomBlobs.push_back(blob);}
85  std::list<ScaleSpaceBlob<T>*> TopBlobs() {return topBlobs;}
86  std::list<ScaleSpaceBlob<T>*> BottomBlobs() {return bottomBlobs;}
87  };
88 
89  // Scale space blobs
90  // Characterised by an image/subject name (default="subject")
91  // and a label. This is for future graph handling and multi-subject
92  // matching
93 
94  template<class T> class ScaleSpaceBlob {
95 
96  protected:
97 
98  std::string _subject;
99  int _label;
100  //std::list<GreyLevelBlob<T>*> glBlobs;
101  float scaleMin;
102  float scaleMax;
103 
104  float scaleRep; // scale at which the blob will be represented
106 
107  float lifeTime;
109 
110  Bifurcation<T> *topBifurcation; // scale(topBif)>scale(bottomBif)
112 
113  // Rajouter les mesures, localisation, glBlob representatif, etc...
114 
115  public:
116 
117  ScaleSpaceBlob() { glBlobs = std::list<GreyLevelBlob<T>*>(); }
118  ScaleSpaceBlob( const std::string & subject )
119  {
120  _subject = subject;
121  glBlobs = std::list<GreyLevelBlob<T>*>();
122  }
123  ScaleSpaceBlob( const std::string & subject, int label )
124  {
125  _subject = subject;
126  _label = label;
127  glBlobs = std::list<GreyLevelBlob<T>*>();
128  }
129  void SetLabel( int label ) { label = _label; }
130  int Label() { return _label; }
131 
132  // test
133  std::list<GreyLevelBlob<T>*> glBlobs;
134 
135  void SetScaleMin(float t) {scaleMin=t;}
136  void SetScaleMax(float t) {scaleMax=t;}
137  float ScaleMin() {return scaleMin;}
138  float ScaleMax() {return scaleMax;}
139  float ScaleRep() {return scaleRep;}
140  float LifeTime() {return lifeTime;}
142 
147  //std::list<GreyLevelBlob<T>*> GlBlobs() {return glBlobs;}
148  void AddGreyLevelBlob(GreyLevelBlob<T> *blob) { glBlobs.push_back(blob); }
153  };
154 
155  // --------------Definitions-------------------------------------------------------
156 
157  template<class T> void ScaleSpaceBlob<T>::ComputeLifeTime()
158  {
159  lifeTime=log(topBifurcation->tMid()) - log(bottomBifurcation->tMid());
160  }
161 
162  //---------------------------------------
163 
164  template<class T> void ScaleSpaceBlob<T>::ComputeScaleRep()
165  {
166  // Cette definition peut changer, il peut même y en avoir plusieurs
167  // temporaire, donc.
168  float t, delta=1000.0;
169  typename std::list<GreyLevelBlob<T>*>::iterator
170  itBlob=glBlobs.begin();
171 
172  scaleRep=exp((log(scaleMin) + log(scaleMax))/2.0); // the ususal logarithmic scale
173 // cout << "sR : " << scaleMin << ";" << scaleMax << ";" << scaleRep ;
174  for (; itBlob!=glBlobs.end(); ++itBlob) // now finding the glBlob that has a scale the closest
175  {
176  t=(*itBlob)->GetScale(); // to scaleRep
177 // cout << t << endl;
178  if (fabs(t-scaleRep) < delta)
179  {
180  delta=fabs(t-scaleRep);
181  glBlobRep=(*itBlob);
182  }
183  }
184 // if (glBlobRep->GetListePoints().size() == 1) cout << "->" << glBlobRep->GetScale() << "test" << endl; else cout << endl;
185 
186  }
187 
188 }
189 
190 #endif
Bifurcation(char type, float tUp, float tDown)
void settUp(float tUp)
std::list< ScaleSpaceBlob< T > * > bottomBlobs
void AddTopBlob(ScaleSpaceBlob< T > *blob)
std::list< ScaleSpaceBlob< T > * > TopBlobs()
void setType(char type)
void AddBottomBlob(ScaleSpaceBlob< T > *blob)
void settMid(float tMid)
std::list< ScaleSpaceBlob< T > * > BottomBlobs()
std::list< ScaleSpaceBlob< T > * > topBlobs
void settDown(float tDown)
Class for grey-level blobs Templated with respect to the type of points: TypeSite<carto::VolumeRef<T>...
void SetLabel(int label)
Bifurcation< T > * bottomBifurcation
void AddGreyLevelBlob(GreyLevelBlob< T > *blob)
BlobMeasurements measurements
Bifurcation< T > * TopBifurcation()
void SetScaleMin(float t)
void SetBottomBifurcation(Bifurcation< T > *bif)
GreyLevelBlob< T > * GlBlobRep()
Bifurcation< T > * BottomBifurcation()
GreyLevelBlob< T > * glBlobRep
BlobMeasurements GetMeasurements()
void SetMeasurements(BlobMeasurements meas)
ScaleSpaceBlob(const std::string &subject, int label)
std::list< GreyLevelBlob< T > * > glBlobs
void SetTopBifurcation(Bifurcation< T > *bif)
ScaleSpaceBlob(const std::string &subject)
Bifurcation< T > * topBifurcation
void SetScaleMax(float t)
T * iterator
PrimalSketchEvents
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