roi.h

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/* This software and supporting documentation are distributed by
 *     Institut Federatif de Recherche 49
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 *     91191 Gif-sur-Yvette cedex
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 *
 * This software is governed by the CeCILL-B license under
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 * You can  use, modify and/or redistribute the software under the
 * terms of the CeCILL-B license as circulated by CEA, CNRS
 * and INRIA at the following URL "http://www.cecill.info".
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/*
 *  Region Of Interest
 */
#ifndef AIMS_ROI_ROI_H
#define AIMS_ROI_ROI_H
 
#include <aims/config/aimsdata_config.h>
#include <map>
 
#include <cartodata/volume/volume.h>
#include <aims/bucket/bucket.h>
#include <graph/graph/graph.h>
#include <aims/roi/hie.h>
 
 
namespace aims {
 
 
class AIMSDATA_API AimsRoi : public Graph
{
public:
 
  AimsRoi( Hierarchy *hierarchy=NULL );
  virtual ~AimsRoi() { }
 
  void setLabel( const carto::VolumeRef< short> & label);
 
  void setHierarchy( Hierarchy *hie ) { hRoi = hie; }
  Hierarchy* getHierarchy() { return hRoi;};
 
  std::set<Vertex*> VertByNameAndDescendantName(std::string& name);
 
  void setBucketFilename( const std::string& );
 
  void data2bucket();
  void data2bucket( const std::map <int,std::string> &nameList );
  void bucket2data( int borderWidth=0 );
  AimsRoi* clipBucket( int x, int y, int z, int lx, int ly, int lz);
 
 
 
private:
 
  Hierarchy     *hRoi;
  Hierarchy      hDefault;
};
 
}
 
#endif