Hierarchical ROI Analysis

None

Parameters

Input_ListOf_Volume: ListOf( 3D Volume ) ( input )

Volume_Names: ListOf( String ) ( optional, input )

Input_ListOf_ROI: ListOf( ROI ) ( input )

Input_ROI_Hierarchy: Hierarchy ( input )

Input_ListOf_Motion: ListOf( Transformation matrix ) ( optional, input )

Motion_Direction: Choice ( optional, input )

Full: Boolean ( optional, input )

Left: Boolean ( optional, input )

Right: Boolean ( optional, input )

Volume: Boolean ( optional, input )

Mean: Boolean ( optional, input )

StDev: Boolean ( optional, input )

Min: Boolean ( optional, input )

Max: Boolean ( optional, input )

Output_CSV_File: CSV file ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : HierarchicalRoiFeatures

File name : brainvisa/toolboxes/bioprocessing/processes/platform/MIRCen/analysis/HierarchicalRoiFeatures.py

Supported file formats :

Input_ListOf_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ListOf_ROI :

Graph and data, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Graph and data, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

Input_ROI_Hierarchy :

Hierarchy, Hierarchy

Input_ListOf_Motion :

Transformation matrix, Transformation matrix

Output_CSV_File :

CSV file, CSV file