[Reference Segmentation] Convert and merge

None

Parameters

input_axial: ROI ( optional, input )

input_coronal: ROI ( optional, input )

input_sagittal: ROI ( optional, input )

input_hierarchy: Hierarchy ( input )

input_mri: 3D Volume ( optional, input )

output_directory: Directory ( optional, input )

output_format: Choice ( optional, input )

write_conversion: Boolean ( input )

write_merged: Boolean ( input )

write_mask: Boolean ( input )

output_axial: 3D Volume ( optional, output )

output_coronal: 3D Volume ( optional, output )

output_sagittal: 3D Volume ( optional, output )

output_merged: 3D Volume ( output )

output_mask_axial: 3D Volume ( optional, output )

output_mask_coronal: 3D Volume ( optional, output )

output_mask_sagittal: 3D Volume ( optional, output )

output_mask_merged: 3D Volume ( output )

Technical information

Toolbox : Primatologist

User level : 2

Identifier : convertAndMergeReference

File name : brainvisa/toolboxes/primatologist/processes/tools/convertAndMergeReference.py

Supported file formats :

input_axial :

Graph and data, Graph and data

input_coronal :

Graph and data, Graph and data

input_sagittal :

Graph and data, Graph and data

input_hierarchy :

Hierarchy, Hierarchy

input_mri :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output_directory :

Directory, Directory

output_axial :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_coronal :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_sagittal :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_merged :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_mask_axial :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_mask_coronal :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_mask_sagittal :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_mask_merged :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image