#include <bioprocessing/graph/basegraph.h>

Inheritance diagram for bio::BaseGraphRef< E >:

[legend]

Collaboration diagram for bio::BaseGraphRef< E >:

Public Types
typedef Pointed::Vertex	Vertex

typedef Pointed::Edge	Edge

typedef Pointed::Graph	Graph

Public Member Functions
	BaseGraphRef ()

	BaseGraphRef (Pointed *g)

	BaseGraphRef (const Base &other)

virtual	~BaseGraphRef ()

virtual void	insert (Vertex v)

virtual void	insert (Edge e)

virtual bool	contains (const Vertex &v) const

virtual bool	contains (const Edge &e) const

virtual bool	empty () const

virtual void	clear ()

virtual bool	operator== (const This &other) const

virtual bool	operator!= (const This &other) const

virtual bool	operator> (const This &other) const

virtual bool	operator< (const This &other) const

virtual bool	operator>= (const This &other) const

virtual bool	operator<= (const This &other) const

virtual bool	isAdjacent (const Vertex &x, const Vertex &y) const

virtual bool	isLinked (const Vertex &x, const Vertex &y) const

virtual bool	isSubGraph (const Graph &g) const

virtual bool	isConnectedComponent (const Graph &g) const

virtual bool	isAdjacentTo (const Vertex &v, const Graph &g) const

virtual bool	isAdjacentFrom (const Vertex &v, const Graph &g) const

virtual bool	isAdjacent (const Edge &e) const

virtual bool	isLinked (const Vertex &v) const

virtual bool	isExtension (const Graph &h, const Graph &g) const

virtual bool	isForestRelativeTo (const Graph &h, const Graph &g) const

virtual bool	isSpanningForestRelativeTo (const Graph &h, const Graph &g) const

virtual bool	isTree (const Graph &g) const

virtual bool	isSpanningTree (const Graph &g) const

virtual bool	isForest (const Graph &g) const

virtual bool	isSpanningForest (const Graph &g) const

template<typename EdgeIterator >
bool	isGraphCut (EdgeIterator begin, EdgeIterator end, const Graph &g) const

template<typename EdgeSet >
bool	isGraphCut (const EdgeSet &es, const Graph &g) const

Static Public Member Functions
static Graph	none ()

template<typename Set >
static Set	getComplement (const Set &s, const Set &e)

Protected Types
typedef carto::rc_ptr< BaseGraph< E > >	Base

typedef BaseGraph< E >	Pointed

typedef BaseGraphRef< E >	This

Friends
class	BaseGraph< E >

Detailed Description

template<typename E>
class bio::BaseGraphRef< E >

Reference to a BaseGraph.

This utility class is the entry point to graphs. It permits to avoid unnecessary copys of big structures, while giving access to all the necessary methods.

Definition at line 311 of file basegraph.h.

Member Typedef Documentation

◆ Base

template<typename E >

typedef carto::rc_ptr<BaseGraph<E> > bio::BaseGraphRef< E >::Base

protected

Definition at line 315 of file basegraph.h.

◆ Edge

template<typename E >

typedef Pointed::Edge bio::BaseGraphRef< E >::Edge

Definition at line 320 of file basegraph.h.

◆ Graph

template<typename E >

typedef Pointed::Graph bio::BaseGraphRef< E >::Graph

Definition at line 321 of file basegraph.h.

◆ Pointed

template<typename E >

typedef BaseGraph<E> bio::BaseGraphRef< E >::Pointed

protected

Definition at line 316 of file basegraph.h.

◆ This

template<typename E >

typedef BaseGraphRef<E> bio::BaseGraphRef< E >::This

protected

Definition at line 317 of file basegraph.h.

◆ Vertex

template<typename E >

typedef Pointed::Vertex bio::BaseGraphRef< E >::Vertex

Definition at line 319 of file basegraph.h.

Constructor & Destructor Documentation

◆ BaseGraphRef() [1/3]

template<typename E >

bio::BaseGraphRef< E >::BaseGraphRef ( )

inline

Definition at line 325 of file basegraph.h.

◆ BaseGraphRef() [2/3]

template<typename E >

bio::BaseGraphRef< E >::BaseGraphRef ( Pointed * g )

inline

Definition at line 326 of file basegraph.h.

◆ BaseGraphRef() [3/3]

template<typename E >

bio::BaseGraphRef< E >::BaseGraphRef ( const Base & other )

inline

Definition at line 327 of file basegraph.h.

◆ ~BaseGraphRef()

template<typename E >

virtual bio::BaseGraphRef< E >::~BaseGraphRef ( )

inlinevirtual

Definition at line 328 of file basegraph.h.

Member Function Documentation

◆ clear()

template<typename E >

virtual void bio::BaseGraphRef< E >::clear ( )

inlinevirtual

Definition at line 341 of file basegraph.h.

◆ contains() [1/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::contains ( const Edge & e ) const

inlinevirtual

Definition at line 339 of file basegraph.h.

◆ contains() [2/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::contains ( const Vertex & v ) const

inlinevirtual

Definition at line 338 of file basegraph.h.

◆ empty()

template<typename E >

virtual bool bio::BaseGraphRef< E >::empty ( ) const

inlinevirtual

Definition at line 340 of file basegraph.h.

◆ getComplement()

template<typename E >

template<typename Set >

static Set bio::BaseGraphRef< E >::getComplement	(	const Set &	s,
		const Set &	e
	)

inlinestatic

Definition at line 406 of file basegraph.h.

◆ insert() [1/2]

template<typename E >

virtual void bio::BaseGraphRef< E >::insert ( Edge e )

inlinevirtual

Definition at line 337 of file basegraph.h.

◆ insert() [2/2]

template<typename E >

virtual void bio::BaseGraphRef< E >::insert ( Vertex v )

inlinevirtual

Definition at line 336 of file basegraph.h.

◆ isAdjacent() [1/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::isAdjacent ( const Edge & e ) const

inlinevirtual

Definition at line 389 of file basegraph.h.

◆ isAdjacent() [2/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::isAdjacent	(	const Vertex &	x,
		const Vertex &	y
	)		const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 383 of file basegraph.h.

◆ isAdjacentFrom()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isAdjacentFrom	(	const Vertex &	v,
		const Graph &	g
	)		const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 388 of file basegraph.h.

◆ isAdjacentTo()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isAdjacentTo	(	const Vertex &	v,
		const Graph &	g
	)		const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 387 of file basegraph.h.

◆ isConnectedComponent()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isConnectedComponent ( const Graph & g ) const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 386 of file basegraph.h.

◆ isExtension()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isExtension	(	const Graph &	h,
		const Graph &	g
	)		const

inlinevirtual

Definition at line 391 of file basegraph.h.

◆ isForest()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isForest ( const Graph & g ) const

inlinevirtual

Definition at line 396 of file basegraph.h.

◆ isForestRelativeTo()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isForestRelativeTo	(	const Graph &	h,
		const Graph &	g
	)		const

inlinevirtual

Definition at line 392 of file basegraph.h.

◆ isGraphCut() [1/2]

template<typename E >

template<typename EdgeSet >

bool bio::BaseGraphRef< E >::isGraphCut	(	const EdgeSet &	es,
		const Graph &	g
	)		const

inline

Definition at line 401 of file basegraph.h.

◆ isGraphCut() [2/2]

template<typename E >

template<typename EdgeIterator >

bool bio::BaseGraphRef< E >::isGraphCut	(	EdgeIterator	begin,
		EdgeIterator	end,
		const Graph &	g
	)		const

inline

Definition at line 399 of file basegraph.h.

◆ isLinked() [1/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::isLinked ( const Vertex & v ) const

inlinevirtual

Definition at line 390 of file basegraph.h.

◆ isLinked() [2/2]

template<typename E >

virtual bool bio::BaseGraphRef< E >::isLinked	(	const Vertex &	x,
		const Vertex &	y
	)		const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 384 of file basegraph.h.

◆ isSpanningForest()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isSpanningForest ( const Graph & g ) const

inlinevirtual

Definition at line 397 of file basegraph.h.

◆ isSpanningForestRelativeTo()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isSpanningForestRelativeTo	(	const Graph &	h,
		const Graph &	g
	)		const

inlinevirtual

Definition at line 393 of file basegraph.h.

◆ isSpanningTree()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isSpanningTree ( const Graph & g ) const

inlinevirtual

Definition at line 395 of file basegraph.h.

◆ isSubGraph()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isSubGraph ( const Graph & g ) const

inlinevirtual

Reimplemented in bio::VolumeGraphRef< T, P >, and bio::VolumeGraphRef< T, Point >.

Definition at line 385 of file basegraph.h.

◆ isTree()

template<typename E >

virtual bool bio::BaseGraphRef< E >::isTree ( const Graph & g ) const

inlinevirtual

Definition at line 394 of file basegraph.h.

◆ none()

template<typename E >

static Graph bio::BaseGraphRef< E >::none ( )

inlinestatic

Definition at line 332 of file basegraph.h.

◆ operator!=()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator!= ( const This & other ) const

inlinevirtual

Definition at line 354 of file basegraph.h.

◆ operator<()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator< ( const This & other ) const

inlinevirtual

Definition at line 365 of file basegraph.h.

◆ operator<=()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator<= ( const This & other ) const

inlinevirtual

Definition at line 376 of file basegraph.h.

◆ operator==()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator== ( const This & other ) const

inlinevirtual

Definition at line 345 of file basegraph.h.

◆ operator>()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator> ( const This & other ) const

inlinevirtual

Definition at line 358 of file basegraph.h.

◆ operator>=()

template<typename E >

virtual bool bio::BaseGraphRef< E >::operator>= ( const This & other ) const

inlinevirtual

Definition at line 372 of file basegraph.h.

Friends And Related Function Documentation

◆ BaseGraph< E >

template<typename E >

friend class BaseGraph< E >

friend

Definition at line 406 of file basegraph.h.

The documentation for this class was generated from the following file:

bioprocessing/graph/basegraph.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Types

Friends

Detailed Description

template<typename E> class bio::BaseGraphRef< E >

Member Typedef Documentation

◆ Base

◆ Edge

◆ Graph

◆ Pointed

◆ This

◆ Vertex

Constructor & Destructor Documentation

◆ BaseGraphRef() [1/3]

◆ BaseGraphRef() [2/3]

◆ BaseGraphRef() [3/3]

◆ ~BaseGraphRef()

Member Function Documentation

◆ clear()

◆ contains() [1/2]

◆ contains() [2/2]

◆ empty()

◆ getComplement()

◆ insert() [1/2]

◆ insert() [2/2]

◆ isAdjacent() [1/2]

◆ isAdjacent() [2/2]

◆ isAdjacentFrom()

◆ isAdjacentTo()

◆ isConnectedComponent()

◆ isExtension()

◆ isForest()

◆ isForestRelativeTo()

◆ isGraphCut() [1/2]

◆ isGraphCut() [2/2]

◆ isLinked() [1/2]

◆ isLinked() [2/2]

◆ isSpanningForest()

◆ isSpanningForestRelativeTo()

◆ isSpanningTree()

◆ isSubGraph()

◆ isTree()

◆ none()

◆ operator!=()

◆ operator<()

◆ operator<=()

◆ operator==()

◆ operator>()

◆ operator>=()

Friends And Related Function Documentation

◆ BaseGraph< E >

template<typename E>
class bio::BaseGraphRef< E >