hi there,
I'm looking for this program, which appears in the list of aims commands ( http://brainvisa.info/doc/html/shfjcomm ... mands.html ) but doesn't seem to be included in brainvisa 3.0.1 or 3.0.2
thanks,
sylvain
AimsMorphoMath?
okokok... now, I've tried that Nmr program... I'm just trying to do a closing on a binary image (a head mask created by BV)... can anybody help me with the options?
1. it asks for a threshold and a threshold mode, which I don't know what they are...
2. it gives me an error "invalid output type" when I try to run it
thanks,
sylvain
1. it asks for a threshold and a threshold mode, which I don't know what they are...
2. it gives me an error "invalid output type" when I try to run it
thanks,
sylvain
Hi,
We have the same pb at SHFJ !
Otherwise, there are 2 other commands: AimsOpening and AimsClosing.
I suppose that NmrMorphologicalOperation is a command which do a lot of things ... threshold, opening, closing .... if you want just to do a closing, I think that you must use the -op closing and -r options.
About "invalid output type", I know that sometimes it is better to convert your data in S16.
Isa
We have the same pb at SHFJ !
Code: Select all
denghien% AimsMorphoMath-2006_07_21
QFile::open: No file name specified
/home/appli/Fedora-4/SHFJ_pack-main-linux-2006_07_21shfj-1/bin/commands-links/AimsMorphoMath: No such file or directory
I suppose that NmrMorphologicalOperation is a command which do a lot of things ... threshold, opening, closing .... if you want just to do a closing, I think that you must use the -op closing and -r options.
About "invalid output type", I know that sometimes it is better to convert your data in S16.
Isa
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Hi,
Well, I think there is a little bit of mix-up in the commands.html web page, and commands that are not in the stable release have been listed here. Sorry.
AimsMorphoMath doesn't exist in the current release: it is a new command, only in the development version.
You can use AimsErosion, AimsDilation, AimsClosing and AimsOpening for standard morphomath operations on binary volumes.
Denis
Well, I think there is a little bit of mix-up in the commands.html web page, and commands that are not in the stable release have been listed here. Sorry.
AimsMorphoMath doesn't exist in the current release: it is a new command, only in the development version.
You can use AimsErosion, AimsDilation, AimsClosing and AimsOpening for standard morphomath operations on binary volumes.
Denis
okok, thanks!
but there's a little problem with AimsClosing... the usage (result of 'AimsClosing -h') says it computes the Chamfer distance map; it's actually identical to what you get when you do 'AimsChamferDistanceMap -h'... bug?
(you can see this in the commands.html file also )
Denis, can you give me the true usage for AimsClosing... I suspect it's the same as AimsOpening, but a confirmation would be nice! thanks!
but there's a little problem with AimsClosing... the usage (result of 'AimsClosing -h') says it computes the Chamfer distance map; it's actually identical to what you get when you do 'AimsChamferDistanceMap -h'... bug?
(you can see this in the commands.html file also )
Denis, can you give me the true usage for AimsClosing... I suspect it's the same as AimsOpening, but a confirmation would be nice! thanks!
- Jean-Francois Mangin
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