#include <vip/histo.h>

Include dependency graph for histo_ss.h:

This graph shows which files directly or indirectly include this file:

Data Structures
struct	singularity

struct	vip_ss_struct

struct	sssingularity

struct	SScascade

struct	SSobject

struct	vip_T1histogram_analysis

Macros
#define	SPGR_IR_RATIO 0.20 /for 3T unbiased image 0.25->0.20, JFM 8-2001/

#define	MRI_T1_SPGR 20

#define	MRI_T1_IR 21

#define	MRI_T1_SEGMENTED_BRAIN 22

#define	MODES_2 23

#define	MODES_3 24

#define	MODES_4 25

#define	MODE_TISSUE 26

#define	MODE_HISTO 27

#define	MODE_RIDGE 28

#define	SS_SIMPLE_EXTREMUM 11

#define	SS_TRACKED_EXTREMUM 12

#define	SS_CASCADE_EXTREMUM 13

Typedefs
typedef struct singularity	Singularity

typedef struct vip_ss_struct	Vip1DScaleSpaceStruct

typedef struct sssingularity	SSSingularity

typedef struct SScascade	SSCascade

typedef struct SSobject	SSObject

typedef struct vip_T1histogram_analysis	VipT1HistoAnalysis

Functions
VipT1HistoAnalysis *	VipReadT1HistoAnalysis (char *name)

int	VipWriteT1HistoAnalysis (VipT1HistoAnalysis ana, char name)

int	VipComputeSSSingularityGammaExtrema (SSSingularity s, float gamma, Singularity sval, int nval, float dscale)

SSCascade *	VipCreateHighestCascade (SSSingularity *slist, int nbiter, int ninfinite)

SSCascade *	VipComputeScaleOrderedCascadeList (SSSingularity list, int itermax, VipHisto hcumul)

SSCascade *	VipComputeOrderedCascadeList (SSSingularity list, int itermax, VipHisto hcumul)

SSCascade *	VipDetectCascadeFromD2 (SSSingularity list, SSSingularity s)

SSCascade *	VipDetectCascadeFromD1 (SSSingularity list, SSSingularity s)

int	VipCountSingularitiesStillAlive (SSSingularity slist, int n, int scalemax)

Volume *	VipComputeHistoScaleSpaceByDiffusion (VipHisto *histo, int scalemax, float dt)

Volume *	VipComputeScaleSpaceFirstDeriv (Volume *vol)

Volume *	VipComputeScaleSpaceSecondDeriv (Volume *vol)

SSSingularity *	VipComputeSSSingularityList (Vip1DScaleSpaceStruct *ssstruct, int scalemin, int trackD0, int trackD1, int trackD2, int trackD3, int trackD4)

Vip1DScaleSpaceStruct *	VipCompute1DScaleSpaceStructFromHisto (VipHisto *shorthisto, int scalemax, float dscale, int offset, int nderivative, int undersampling_factor)

int	VipFindSSSingularityMates (SSSingularity *slist)

Volume *	VipDetectExtremaFrom1DSS (Volume *ss)

int	VipConvertScaleSpaceToSplotFormat (Volume vol, int xmin, int xmax, int scalemin, int scalemax, char filename)

int	VipAnalyseCascadesIRSequence (VipT1HistoAnalysis ana, SSCascade clist, Vip1DScaleSpaceStruct *volstruct)

int	VipExpandSSObjectSingularities (SSObject o, Vip1DScaleSpaceStruct volstruct)

int	VipMarkNHighestCascades (SSCascade clist, int n, Vip1DScaleSpaceStruct volstruct)

int	VipMarkNBiggestCascades (SSCascade clist, int n, Vip1DScaleSpaceStruct volstruct)

int	VipMarkAnalysedObjectsHisto (VipT1HistoAnalysis ana, Vip1DScaleSpaceStruct volstruct)

int	VipMarkAnalysedObjects (VipT1HistoAnalysis ana, Vip1DScaleSpaceStruct volstruct)

int	VipCreateGnuplotFileFromExtrema (Vip1DScaleSpaceStruct volstruct, char name, int tracked, int psfile, int title, int writeD0, int writeD1, int writeD2, int writeD3, int writeD4)

int	VipCreatePlotFileFromExtrema (int plottype, Vip1DScaleSpaceStruct volstruct, char name, int tracked, int psfile, int title, int writeD0, int writeD1, int writeD2, int writeD3, int writeD4)
	if plottype=0: gnuplot; 1: matplotlib

int	VipFree1DScaleSpaceStruct (Vip1DScaleSpaceStruct *ssstruct)

int	VipFreeSSSingularityList (SSSingularity *ss)

int	VipFreeCascadeList (SSCascade *c)

VipT1HistoAnalysis *	VipAnalyseCascades (SSCascade clist, Vip1DScaleSpaceStruct volstruct, int sequence)

int	VipAnalyseCascadesModes (VipT1HistoAnalysis ana, SSCascade clist, Vip1DScaleSpaceStruct *volstructana, int sequence)

int	VipAnalyseCascadesSegmentedSequence (VipT1HistoAnalysis ana, SSCascade clist, Vip1DScaleSpaceStruct *volstruct)

int	VipAnalyseCascadesSPGRSequence (VipT1HistoAnalysis ana, SSCascade clist, SSCascade cbrain, Vip1DScaleSpaceStruct volstruct)

SSCascade *	VipGetInsideRangeCascade (SSCascade *clist, int left, int right, int scalemax)

SSCascade *	VipGetInsideRangeBiggestCascade (SSCascade *clist, int left, int right, int scalemax)

SSSingularity *	VipGetNextSingularityOnRight (SSSingularity *s, int nature)

SSObject *	VipAllocSSObject ()

int	VipDetectSSExtrema (double input, Vip_S8BIT extrema, int dim, int numberplus, int numbermoins)

Vip1DScaleSpaceStruct *	VipCompute1DScaleSpaceStructUntilLastCascade (VipHisto *shorthisto, float dscale, int offset, int nderivative, int undersampling_factor)

int	VipMarkSSObjectExtrema (SSObject o, Vip1DScaleSpaceStruct volstruct)

int	VipPutSSExtremaValAndSpeedInBuffer (double data, double denom, double num, Vip_S8BIT eptr, int dim, Singularity val, int nval, int sizeval, int iter)

int	VipComputeSSSingularitySpeedMinima (SSSingularity s, Singularity sval, int nval, float dscale)

int	VipComputeSSSingularitySimpleSpeedMinima (SSSingularity *s)

int	VipComputeSSSingularityGaussianLikeSpeed (SSSingularity s, Singularity sval, int nval, float dscale, float sigmamin, int nature)

int	VipComputeAnalysedLoc (SSObject *o, int scale)

VipT1HistoAnalysis *	VipGetT1HistoAnalysis (Volume *vol)

VipT1HistoAnalysis *	VipGetT1HistoAnalysisCustomized (Volume *vol, int track, float dscale)

Macro Definition Documentation

◆ MODE_HISTO

#define MODE_HISTO 27

Definition at line 135 of file histo_ss.h.

◆ MODE_RIDGE

#define MODE_RIDGE 28

Definition at line 136 of file histo_ss.h.

◆ MODE_TISSUE

#define MODE_TISSUE 26

Definition at line 134 of file histo_ss.h.

◆ MODES_2

#define MODES_2 23

Definition at line 131 of file histo_ss.h.

◆ MODES_3

#define MODES_3 24

Definition at line 132 of file histo_ss.h.

◆ MODES_4

#define MODES_4 25

Definition at line 133 of file histo_ss.h.

◆ MRI_T1_IR

#define MRI_T1_IR 21

Definition at line 129 of file histo_ss.h.

◆ MRI_T1_SEGMENTED_BRAIN

#define MRI_T1_SEGMENTED_BRAIN 22

Definition at line 130 of file histo_ss.h.

◆ MRI_T1_SPGR

#define MRI_T1_SPGR 20

Definition at line 128 of file histo_ss.h.

◆ SPGR_IR_RATIO

#define SPGR_IR_RATIO 0.20 /*for 3T unbiased image 0.25->0.20, JFM 8-2001*/

Definition at line 126 of file histo_ss.h.

◆ SS_CASCADE_EXTREMUM

#define SS_CASCADE_EXTREMUM 13

Definition at line 140 of file histo_ss.h.

◆ SS_SIMPLE_EXTREMUM

#define SS_SIMPLE_EXTREMUM 11

Definition at line 138 of file histo_ss.h.

◆ SS_TRACKED_EXTREMUM

#define SS_TRACKED_EXTREMUM 12

Definition at line 139 of file histo_ss.h.

Typedef Documentation

◆ Singularity

typedef struct singularity Singularity

◆ SSCascade

typedef struct SScascade SSCascade

◆ SSObject

typedef struct SSobject SSObject

◆ SSSingularity

typedef struct sssingularity SSSingularity

◆ Vip1DScaleSpaceStruct

typedef struct vip_ss_struct Vip1DScaleSpaceStruct

◆ VipT1HistoAnalysis

typedef struct vip_T1histogram_analysis VipT1HistoAnalysis

Function Documentation

◆ VipAllocSSObject()

SSObject * VipAllocSSObject ( )

extern

◆ VipAnalyseCascades()

VipT1HistoAnalysis * VipAnalyseCascades	(	SSCascade *	clist,
		Vip1DScaleSpaceStruct *	volstruct,
		int	sequence )

extern

◆ VipAnalyseCascadesIRSequence()

int VipAnalyseCascadesIRSequence	(	VipT1HistoAnalysis *	ana,
		SSCascade *	clist,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipAnalyseCascadesModes()

int VipAnalyseCascadesModes	(	VipT1HistoAnalysis *	ana,
		SSCascade *	clist,
		Vip1DScaleSpaceStruct *	volstructana,
		int	sequence )

extern

◆ VipAnalyseCascadesSegmentedSequence()

int VipAnalyseCascadesSegmentedSequence	(	VipT1HistoAnalysis *	ana,
		SSCascade *	clist,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipAnalyseCascadesSPGRSequence()

int VipAnalyseCascadesSPGRSequence	(	VipT1HistoAnalysis *	ana,
		SSCascade *	clist,
		SSCascade *	cbrain,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipCompute1DScaleSpaceStructFromHisto()

Vip1DScaleSpaceStruct * VipCompute1DScaleSpaceStructFromHisto	(	VipHisto *	shorthisto,
		int	scalemax,
		float	dscale,
		int	offset,
		int	nderivative,
		int	undersampling_factor )

extern

◆ VipCompute1DScaleSpaceStructUntilLastCascade()

Vip1DScaleSpaceStruct * VipCompute1DScaleSpaceStructUntilLastCascade	(	VipHisto *	shorthisto,
		float	dscale,
		int	offset,
		int	nderivative,
		int	undersampling_factor )

extern

◆ VipComputeAnalysedLoc()

int VipComputeAnalysedLoc	(	SSObject *	o,
		int	scale )

extern

◆ VipComputeHistoScaleSpaceByDiffusion()

Volume * VipComputeHistoScaleSpaceByDiffusion	(	VipHisto *	histo,
		int	scalemax,
		float	dt )

extern

◆ VipComputeOrderedCascadeList()

SSCascade * VipComputeOrderedCascadeList	(	SSSingularity *	list,
		int	itermax,
		VipHisto *	hcumul )

extern

◆ VipComputeScaleOrderedCascadeList()

SSCascade * VipComputeScaleOrderedCascadeList	(	SSSingularity *	list,
		int	itermax,
		VipHisto *	hcumul )

extern

◆ VipComputeScaleSpaceFirstDeriv()

Volume * VipComputeScaleSpaceFirstDeriv ( Volume * vol )

extern

◆ VipComputeScaleSpaceSecondDeriv()

Volume * VipComputeScaleSpaceSecondDeriv ( Volume * vol )

extern

◆ VipComputeSSSingularityGammaExtrema()

int VipComputeSSSingularityGammaExtrema	(	SSSingularity *	s,
		float	gamma,
		Singularity *	sval,
		int	nval,
		float	dscale )

extern

◆ VipComputeSSSingularityGaussianLikeSpeed()

int VipComputeSSSingularityGaussianLikeSpeed	(	SSSingularity *	s,
		Singularity *	sval,
		int	nval,
		float	dscale,
		float	sigmamin,
		int	nature )

extern

◆ VipComputeSSSingularityList()

SSSingularity * VipComputeSSSingularityList	(	Vip1DScaleSpaceStruct *	ssstruct,
		int	scalemin,
		int	trackD0,
		int	trackD1,
		int	trackD2,
		int	trackD3,
		int	trackD4 )

extern

◆ VipComputeSSSingularitySimpleSpeedMinima()

int VipComputeSSSingularitySimpleSpeedMinima ( SSSingularity * s )

extern

◆ VipComputeSSSingularitySpeedMinima()

int VipComputeSSSingularitySpeedMinima	(	SSSingularity *	s,
		Singularity *	sval,
		int	nval,
		float	dscale )

extern

◆ VipConvertScaleSpaceToSplotFormat()

int VipConvertScaleSpaceToSplotFormat	(	Volume *	vol,
		int	xmin,
		int	xmax,
		int	scalemin,
		int	scalemax,
		char *	filename )

extern

◆ VipCountSingularitiesStillAlive()

int VipCountSingularitiesStillAlive	(	SSSingularity *	slist,
		int *	n,
		int	scalemax )

extern

◆ VipCreateGnuplotFileFromExtrema()

int VipCreateGnuplotFileFromExtrema	(	Vip1DScaleSpaceStruct *	volstruct,
		char *	name,
		int	tracked,
		int	psfile,
		int	title,
		int	writeD0,
		int	writeD1,
		int	writeD2,
		int	writeD3,
		int	writeD4 )

extern

◆ VipCreateHighestCascade()

SSCascade * VipCreateHighestCascade	(	SSSingularity *	slist,
		int	nbiter,
		int	ninfinite )

extern

◆ VipCreatePlotFileFromExtrema()

int VipCreatePlotFileFromExtrema	(	int	plottype,
		Vip1DScaleSpaceStruct *	volstruct,
		char *	name,
		int	tracked,
		int	psfile,
		int	title,
		int	writeD0,
		int	writeD1,
		int	writeD2,
		int	writeD3,
		int	writeD4 )

extern

if plottype=0: gnuplot; 1: matplotlib

◆ VipDetectCascadeFromD1()

SSCascade * VipDetectCascadeFromD1	(	SSSingularity *	list,
		SSSingularity *	s )

extern

◆ VipDetectCascadeFromD2()

SSCascade * VipDetectCascadeFromD2	(	SSSingularity *	list,
		SSSingularity *	s )

extern

◆ VipDetectExtremaFrom1DSS()

Volume * VipDetectExtremaFrom1DSS ( Volume * ss )

◆ VipDetectSSExtrema()

int VipDetectSSExtrema	(	double *	input,
		Vip_S8BIT *	extrema,
		int	dim,
		int *	numberplus,
		int *	numbermoins )

extern

◆ VipExpandSSObjectSingularities()

int VipExpandSSObjectSingularities	(	SSObject *	o,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipFindSSSingularityMates()

int VipFindSSSingularityMates ( SSSingularity * slist )

extern

◆ VipFree1DScaleSpaceStruct()

int VipFree1DScaleSpaceStruct ( Vip1DScaleSpaceStruct * ssstruct )

extern

◆ VipFreeCascadeList()

int VipFreeCascadeList ( SSCascade * c )

extern

◆ VipFreeSSSingularityList()

int VipFreeSSSingularityList ( SSSingularity * ss )

extern

◆ VipGetInsideRangeBiggestCascade()

SSCascade * VipGetInsideRangeBiggestCascade	(	SSCascade *	clist,
		int	left,
		int	right,
		int	scalemax )

extern

◆ VipGetInsideRangeCascade()

SSCascade * VipGetInsideRangeCascade	(	SSCascade *	clist,
		int	left,
		int	right,
		int	scalemax )

extern

◆ VipGetNextSingularityOnRight()

SSSingularity * VipGetNextSingularityOnRight	(	SSSingularity *	s,
		int	nature )

extern

◆ VipGetT1HistoAnalysis()

VipT1HistoAnalysis * VipGetT1HistoAnalysis ( Volume * vol )

extern

◆ VipGetT1HistoAnalysisCustomized()

VipT1HistoAnalysis * VipGetT1HistoAnalysisCustomized	(	Volume *	vol,
		int	track,
		float	dscale )

◆ VipMarkAnalysedObjects()

int VipMarkAnalysedObjects	(	VipT1HistoAnalysis *	ana,
		Vip1DScaleSpaceStruct *	volstruct )

◆ VipMarkAnalysedObjectsHisto()

int VipMarkAnalysedObjectsHisto	(	VipT1HistoAnalysis *	ana,
		Vip1DScaleSpaceStruct *	volstruct )

◆ VipMarkNBiggestCascades()

int VipMarkNBiggestCascades	(	SSCascade *	clist,
		int	n,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipMarkNHighestCascades()

int VipMarkNHighestCascades	(	SSCascade *	clist,
		int	n,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipMarkSSObjectExtrema()

int VipMarkSSObjectExtrema	(	SSObject *	o,
		Vip1DScaleSpaceStruct *	volstruct )

extern

◆ VipPutSSExtremaValAndSpeedInBuffer()

int VipPutSSExtremaValAndSpeedInBuffer	(	double *	data,
		double *	denom,
		double *	num,
		Vip_S8BIT *	eptr,
		int	dim,
		Singularity *	val,
		int *	nval,
		int	sizeval,
		int	iter )

extern

◆ VipReadT1HistoAnalysis()

VipT1HistoAnalysis * VipReadT1HistoAnalysis ( char * name )

extern

◆ VipWriteT1HistoAnalysis()

int VipWriteT1HistoAnalysis	(	VipT1HistoAnalysis *	ana,
		char *	name )

extern

VIP: Volume Image Processing

Data Structures

Macros

Typedefs

Functions

Macro Definition Documentation

◆ MODE_HISTO

◆ MODE_RIDGE

◆ MODE_TISSUE

◆ MODES_2

◆ MODES_3

◆ MODES_4

◆ MRI_T1_IR

◆ MRI_T1_SEGMENTED_BRAIN

◆ MRI_T1_SPGR

◆ SPGR_IR_RATIO

◆ SS_CASCADE_EXTREMUM

◆ SS_SIMPLE_EXTREMUM

◆ SS_TRACKED_EXTREMUM

Typedef Documentation

◆ Singularity

◆ SSCascade

◆ SSObject

◆ SSSingularity

◆ Vip1DScaleSpaceStruct

◆ VipT1HistoAnalysis

Function Documentation

◆ VipAllocSSObject()

◆ VipAnalyseCascades()

◆ VipAnalyseCascadesIRSequence()

◆ VipAnalyseCascadesModes()

◆ VipAnalyseCascadesSegmentedSequence()

◆ VipAnalyseCascadesSPGRSequence()

◆ VipCompute1DScaleSpaceStructFromHisto()

◆ VipCompute1DScaleSpaceStructUntilLastCascade()

◆ VipComputeAnalysedLoc()

◆ VipComputeHistoScaleSpaceByDiffusion()

◆ VipComputeOrderedCascadeList()

◆ VipComputeScaleOrderedCascadeList()

◆ VipComputeScaleSpaceFirstDeriv()

◆ VipComputeScaleSpaceSecondDeriv()

◆ VipComputeSSSingularityGammaExtrema()

◆ VipComputeSSSingularityGaussianLikeSpeed()

◆ VipComputeSSSingularityList()

◆ VipComputeSSSingularitySimpleSpeedMinima()

◆ VipComputeSSSingularitySpeedMinima()

◆ VipConvertScaleSpaceToSplotFormat()

◆ VipCountSingularitiesStillAlive()

◆ VipCreateGnuplotFileFromExtrema()

◆ VipCreateHighestCascade()

◆ VipCreatePlotFileFromExtrema()

◆ VipDetectCascadeFromD1()

◆ VipDetectCascadeFromD2()

◆ VipDetectExtremaFrom1DSS()

◆ VipDetectSSExtrema()

◆ VipExpandSSObjectSingularities()

◆ VipFindSSSingularityMates()

◆ VipFree1DScaleSpaceStruct()

◆ VipFreeCascadeList()

◆ VipFreeSSSingularityList()

◆ VipGetInsideRangeBiggestCascade()

◆ VipGetInsideRangeCascade()

◆ VipGetNextSingularityOnRight()

◆ VipGetT1HistoAnalysis()

◆ VipGetT1HistoAnalysisCustomized()

◆ VipMarkAnalysedObjects()

◆ VipMarkAnalysedObjectsHisto()

◆ VipMarkNBiggestCascades()

◆ VipMarkNHighestCascades()

◆ VipMarkSSObjectExtrema()

◆ VipPutSSExtremaValAndSpeedInBuffer()

◆ VipReadT1HistoAnalysis()

◆ VipWriteT1HistoAnalysis()